Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 R Single Cell Rna Seq Open Source Projects

Open source projects categorized as R Single Cell Rna Seq
Categories > Single Cell Rna Seq
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16most recent commit 3 months ago
Nichenetr ⭐ 416
NicheNet: predict active ligand-target links between interacting cells
most recent commit 3 months ago
Scp ⭐ 253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
most recent commit 4 months ago
Music ⭐ 156
Multi-subject Single Cell Deconvolution
most recent commit 2 years ago
Dittoseq ⭐ 153
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
most recent commit 5 months ago
Sccustomize ⭐ 142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
total releases 5most recent commit 3 months ago
Tidyseurat ⭐ 131
Seurat meets tidyverse. The best of both worlds.
total releases 14most recent commit 3 months ago
Numbat ⭐ 122
Haplotype-aware CNV analysis from single-cell RNA-seq
total releases 7most recent commit 6 months ago
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11most recent commit 3 months ago
Seurat Disk ⭐ 111
Interfaces for HDF5-based Single Cell File Formats
total releases 1most recent commit 6 months ago
Dynmethods ⭐ 107
A collection of 50+ trajectory inference methods within a common interface 📥📤
most recent commit 4 months ago
Swne ⭐ 100
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
most recent commit 9 months ago
Clustifyr ⭐ 93
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
most recent commit 6 months ago
Metacell ⭐ 89
Metacell - Single-cell mRNA Analysis
most recent commit 6 months ago
Scmap ⭐ 68
A tool for unsupervised projection of single cell RNA-seq data
most recent commit 3 years ago
Scimpute ⭐ 58
Accurate and robust imputation of scRNA-seq data
most recent commit 5 years ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Dynverse ⭐ 58
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
most recent commit 3 years ago
Singlecellexperiment ⭐ 52
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/ for the official development version.
most recent commit a year ago
Nebulosa ⭐ 50
R package to visualize gene expression data based on weighted kernel density estimation
most recent commit a year ago
Cellpypes ⭐ 48
Cell type pipes for R
total releases 1most recent commit a year ago
Ewce ⭐ 46
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
most recent commit 5 months ago
Loomr ⭐ 37
An R-based interface for loom files
most recent commit 5 years ago
The 2 Most Depended On R Single Cell Rna Seq Open Source Projects
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16latest release November 13, 2022most recent commit 3 months ago
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84latest release January 26, 2023most recent commit a year agopypi toolchest-client} Downloads
The 10 Latest Releases In R Single Cell Rna Seq Open Source Projects
Tidyseurat ⭐ 131
Seurat meets tidyverse. The best of both worlds.
total releases 14latest release November 28, 2023most recent commit 3 months ago
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11latest release October 11, 2023most recent commit 3 months ago
Numbat ⭐ 122
Haplotype-aware CNV analysis from single-cell RNA-seq
total releases 7latest release June 17, 2023most recent commit 6 months ago
Toolchest Client Python ⭐ 13
Toolchest Python client
dependent packages 1total releases 84latest release January 26, 2023most recent commit a year agopypi toolchest-client} Downloads
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16latest release November 13, 2022most recent commit 3 months ago
Cellpypes ⭐ 48
Cell type pipes for R
total releases 1latest release May 19, 2022most recent commit a year ago
Tidygate ⭐ 18
Label elements within user drawn gates
total releases 1latest release February 21, 2022most recent commit 5 months ago
Seurat Disk ⭐ 111
Interfaces for HDF5-based Single Cell File Formats
total releases 1latest release April 21, 2021most recent commit 6 months ago
Popular Programming Languages Categories
Python
Javascript
Java
Typescript
C Plus Plus
Php
Golang
C
C Sharp
Shell
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.