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The Top 18 R Single Cell Scrna Seq Open Source Projects

Open source projects categorized as R Single Cell Scrna Seq
Categories > Scrna Seq
Categories > Single Cell
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Scp ⭐ 253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
most recent commit 4 months ago
Sccustomize ⭐ 142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
total releases 5most recent commit 3 months ago
Basics ⭐ 81
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
most recent commit 4 months ago
Dynverse ⭐ 58
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
most recent commit 3 years ago
Scperturb ⭐ 56
scPerturb: A resource and a python/R tool for single-cell perturbation data
total releases 5most recent commit 3 months ago
Scclustviz ⭐ 42
Explore and share your scRNAseq clustering results
most recent commit 7 months ago
Scalign ⭐ 28
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
most recent commit 2 years ago
Bitfam ⭐ 23
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
most recent commit a year ago
Frmatch ⭐ 18
Cell type matching in single-cell RNA-sequencing data using FR-Match
most recent commit a year ago
Scmiko ⭐ 17
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
most recent commit a year ago
Bgeedb_r ⭐ 13
Source code of the R packge BgeeDB to use data from the Bgee database
most recent commit 5 months ago
Clustermole ⭐ 11
Unbiased single-cell transcriptomic data cell type identification
total releases 3most recent commit 3 months ago
Apackoftheclones ⭐ 10
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
total releases 2most recent commit 3 months ago
Dea_seurat ⭐ 6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
most recent commit 4 months ago
Scruff ⭐ 6
Single Cell RNA-seq UMI Filtering Facilitator
most recent commit a year ago
Sclane ⭐ 6
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
most recent commit 4 months ago
Ikap ⭐ 5
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
most recent commit 4 years ago
The 4 Latest Releases In R Single Cell Scrna Seq Open Source Projects
Scperturb ⭐ 56
scPerturb: A resource and a python/R tool for single-cell perturbation data
total releases 5latest release September 25, 2023most recent commit 3 months ago
Clustermole ⭐ 11
Unbiased single-cell transcriptomic data cell type identification
total releases 3latest release January 26, 2021most recent commit 3 months ago
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