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The Top 21 Python Snps Open Source Projects

Open source projects categorized as Python Snps
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 9 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Osgenome ⭐ 90
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
most recent commit a year ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42most recent commit 3 months agopypi snps} Downloads
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11most recent commit 4 years ago
Dna Traits ⭐ 64
A fast 23andMe genome text file parser, now superseded by arv
most recent commit 6 years ago
Genetic Trait Detector ⭐ 30
This python script detects known traits in raw human genetic data.
most recent commit 4 months ago
Pairsnp ⭐ 29
A set of scripts for calculating pairwise SNP distance
total releases 5most recent commit a year ago
Snpbinner ⭐ 17
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
most recent commit 5 years ago
Mutation Simulator ⭐ 16
A tool for simulating random mutations in any genome
most recent commit a year ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit a year ago
Radseq ⭐ 12
Collection of Python scripts for parsing/analyses of RAD-seq data
most recent commit 3 years ago
Snpmatch ⭐ 9
A simple python library to identify the most likely strain from the population
most recent commit 3 months ago
Virheat ⭐ 9
Visualize microbial evolution at the SNP level!
total releases 10most recent commit 5 months ago
Snvcallingworkflow ⭐ 7
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
most recent commit a year ago
Snipsa ⭐ 7
Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
most recent commit 9 months ago
Quack ⭐ 6
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)
most recent commit 3 years ago
Clusterduck ⭐ 5
Disease Clustering from Literature Based on Minimal Training Data
most recent commit 4 years ago
Vizsnp St ⭐ 5
Visualizing the effect of SNPs on protein structure using iCn3D
most recent commit a year ago
Genotype Collector And Snp Dataset Creator ⭐ 5
Collecting Genotypes from ENA and make their SNPs
most recent commit 3 years ago
The 6 Latest Releases In Python Snps Open Source Projects
Virheat ⭐ 9
Visualize microbial evolution at the SNP level!
total releases 10latest release November 17, 2023most recent commit 5 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38latest release June 07, 2022most recent commit a year ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42latest release June 06, 2022most recent commit 3 months agopypi snps} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Pairsnp ⭐ 29
A set of scripts for calculating pairwise SNP distance
total releases 5latest release April 02, 2019most recent commit a year ago
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11latest release March 29, 2017most recent commit 4 years ago
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