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The Top 23 Python Sequencing Open Source Projects

Open source projects categorized as Python Sequencing
Categories > Science > Sequencing
Treetoreads ⭐ 29
Pipeline to generate NGS reads from a phylogeny
total releases 5most recent commit 2 years ago
Cross Modal Autoencoders ⭐ 28
most recent commit a year ago
Idseq Workflows ⭐ 27
Portable WDL workflows for IDseq production pipelines
most recent commit 2 years ago
Smallrnaseq ⭐ 26
small rna-seq analysis package
total releases 6most recent commit a year ago
Long Read Proteogenomics ⭐ 26
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
most recent commit a year ago
Nanomod ⭐ 26
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
most recent commit 3 years ago
Telr ⭐ 25
TELR is a fast non-reference transposable element detector from long read sequencing data.
most recent commit a year ago
Teaching ⭐ 25
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
most recent commit 3 months ago
Pathoscope ⭐ 25
Pathoscope: Species identification and strain attribution with unassembled sequencing data
most recent commit 5 years ago
Primavera ⭐ 25
🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
total releases 11most recent commit 2 years ago
Packetweaver ⭐ 25
A Python framework for script filing and task sequencing
most recent commit 4 years ago
Dropkick ⭐ 24
Automated cell filtering for single-cell RNA sequencing data
most recent commit 5 months ago
Xyalign ⭐ 23
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
total releases 7most recent commit 5 years ago
Checkqc ⭐ 23
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
most recent commit 5 months ago
Ngstools ⭐ 23
My own tools code for NGS data analysis (Next Generation Sequencing)
most recent commit 5 years ago
Gembs ⭐ 23
gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
most recent commit 3 years ago
Bioinformatics Course 2020 ⭐ 23
most recent commit 3 years ago
Ptuneos ⭐ 23
pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
most recent commit 2 years ago
Octopus ⭐ 23
A scalable cloning system
most recent commit 10 months ago
Vitae ⭐ 22
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
total releases 18most recent commit 7 months ago
Seqc ⭐ 22
Single-Cell Sequencing Quality Control and Processing Software
most recent commit 5 years ago
Mirge3.0 ⭐ 22
Comprehensive analysis of small RNA sequencing data
total releases 14most recent commit 3 months ago
Natrix ⭐ 21
Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.
most recent commit 2 years ago
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