Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 11 Python Single Cell Scrna Seq Open Source Projects

Open source projects categorized as Python Single Cell Scrna Seq
Categories > Scrna Seq
Categories > Single Cell
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9most recent commit 7 months agopypi scgen} Downloads
Celltypist ⭐ 202
A tool for semi-automatic cell type classification
dependent packages 1total releases 24most recent commit 6 months agopypi celltypist} Downloads
Stream ⭐ 163
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data
most recent commit 2 years ago
Scperturb ⭐ 56
scPerturb: A resource and a python/R tool for single-cell perturbation data
total releases 5most recent commit 3 months ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Cellhint ⭐ 44
A tool for semi-automatic cell type harmonization and integration
most recent commit 3 months ago
Cellar ⭐ 30
Interactive software tool for the assignment of cell types in single-cell studies.
most recent commit a year ago
Scalign ⭐ 28
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
most recent commit 2 years ago
Split Seq_demultiplexing ⭐ 25
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
most recent commit 7 months ago
Cell2sentence Ft ⭐ 21
Cell2Sentence turns scRNA-seq data into text for LLM training.
most recent commit 7 months ago
Irescue ⭐ 8
A tool to quantify transposable elements expression in scRNA-seq
total releases 5most recent commit a year ago
The 2 Most Depended On Python Single Cell Scrna Seq Open Source Projects
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9latest release April 25, 2022most recent commit 7 months agopypi scgen} Downloads
Celltypist ⭐ 202
A tool for semi-automatic cell type classification
dependent packages 1total releases 24latest release November 01, 2023most recent commit 6 months agopypi celltypist} Downloads
The 4 Latest Releases In Python Single Cell Scrna Seq Open Source Projects
Celltypist ⭐ 202
A tool for semi-automatic cell type classification
dependent packages 1total releases 24latest release November 01, 2023most recent commit 6 months agopypi celltypist} Downloads
Scperturb ⭐ 56
scPerturb: A resource and a python/R tool for single-cell perturbation data
total releases 5latest release September 25, 2023most recent commit 3 months ago
Irescue ⭐ 8
A tool to quantify transposable elements expression in scRNA-seq
total releases 5latest release March 13, 2023most recent commit a year ago
Scgen ⭐ 215
Single cell perturbation prediction
dependent packages 2total releases 9latest release April 25, 2022most recent commit 7 months agopypi scgen} Downloads
Popular Programming Languages Categories
Python
Javascript
Java
Typescript
C Plus Plus
Php
Golang
C
C Sharp
Shell
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.