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The Top 23 Python Sars Cov 2 Open Source Projects

Open source projects categorized as Python Sars Cov 2
Categories > Sars Cov 2
Covid 19 Data ⭐ 5,617
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
most recent commit 3 months ago
Ncov ⭐ 1,348
Nextstrain build for novel coronavirus SARS-CoV-2
most recent commit 3 months ago
Coronavirus ⭐ 1,108
Folding@home COVID-19 efforts
most recent commit 3 years ago
Seirsplus ⭐ 571
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
total releases 51most recent commit 2 years ago
Covariants ⭐ 310
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
most recent commit 3 months ago
Open Source Covid 19 ⭐ 230
A global collection of Open Source projects during COVID-19
most recent commit a year ago
Covid 19 Rna Seq Datasets ⭐ 61
A repository for sharing information on available COVID-19 RNA-Seq datasets
most recent commit 2 years ago
Bioexplorer ⭐ 61
The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
total releases 20most recent commit 3 months ago
Phes Odm ⭐ 47
The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.
most recent commit 6 months ago
Covid19_scenarios_data ⭐ 41
Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project
most recent commit 4 years ago
Sc2rf ⭐ 34
SARS-Cov-2 Recombinant Finder for fasta sequences
most recent commit 2 years ago
Ncov Ingest ⭐ 34
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
most recent commit 3 months ago
Gisaid Scrapper ⭐ 31
Scrapping tool for GISAID data regarding SARS-CoV-2
most recent commit 3 years ago
Multisub ⭐ 28
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
total releases 1most recent commit 2 years ago
Covid 19api ⭐ 26
COVID-19 API
most recent commit 2 years ago
Sars2 Stat Kr ⭐ 26
중국 우한 바이러스 한국 확진자 통계
most recent commit 2 years ago
Ena Cog Uk Wfs ⭐ 21
Collection of scripts for automated SARS-CoV-2 genome surveillance.
most recent commit 7 months ago
Pyncov 19 ⭐ 20
Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19
total releases 7most recent commit 4 months ago
Uncovar ⭐ 19
Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.
most recent commit 3 months ago
Coronavirus Dresden ⭐ 19
Collects official SARS-CoV-2 infection statistics published by the city of Dresden.
most recent commit a year ago
Data ⭐ 19
Scraping world-wide data about COVID-19
most recent commit 3 months ago
Sars Cov 2 Processing Requests ⭐ 17
Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.
most recent commit 2 years ago
Anomalydetect ⭐ 16
Detects anomalous resting heart rate from smartwatch data.
most recent commit 3 years ago
The 4 Latest Releases In Python Sars Cov 2 Open Source Projects
Pyncov 19 ⭐ 20
Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19
total releases 7latest release August 14, 2021most recent commit 4 months ago
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