The Top 23 Python Protein Open Source Projects

Open source projects categorized as Python Protein

Categories > Protein

Categories > Programming Languages > Python

Biopython ⭐ 3,918

Official git repository for Biopython (originally converted from CVS)

dependent packages 1,373total releases 58most recent commit 3 months ago

Esm ⭐ 2,577

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

dependent packages 14total releases 12most recent commit 3 months ago

Corona ⭐ 2,441

Reverse engineering SARS-CoV-2

most recent commit 6 months ago

Graphein ⭐ 932

Protein Graph Library

dependent packages 1total releases 29most recent commit 4 months ago

Molecularnodes ⭐ 729

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

dependent packages 1total releases 5most recent commit 3 months ago

Paddlehelix ⭐ 729

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

most recent commit 7 months ago

Proteinnet ⭐ 623

Standardized data set for machine learning of protein structure

most recent commit 3 years ago

Biotite ⭐ 515

A comprehensive library for computational molecular biology

dependent packages 21total releases 52most recent commit 3 months ago

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

dependent packages 119total releases 86most recent commit 3 months ago

Prospr ⭐ 407

ProSPr: Protein Structure Prediction

most recent commit 2 years ago

Progen ⭐ 373

Official release of the ProGen models

most recent commit a year ago

Bakta ⭐ 365

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

total releases 37most recent commit 3 months ago

Prody ⭐ 364

A Python Package for Protein Dynamics Analysis

total releases 10most recent commit 3 months ago

Tape ⭐ 348

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

dependent packages 3total releases 5most recent commit 3 years ago

Equibind ⭐ 321

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

most recent commit 2 years ago

Plip ⭐ 320

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

dependent packages 1total releases 25most recent commit 8 months ago

Pdb Tools ⭐ 319

A dependency-free cross-platform swiss army knife for PDB files.

dependent packages 5total releases 38most recent commit 4 months ago

Prolif ⭐ 286

Interaction Fingerprints for protein-ligand complexes and more

dependent packages 2total releases 20most recent commit 6 months ago

Rgi ⭐ 283

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

most recent commit 4 months ago

Provis ⭐ 272

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

most recent commit a year ago

Rgn ⭐ 263

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

most recent commit 5 years ago

Pypdb ⭐ 258

A Python API for the RCSB Protein Data Bank (PDB)

dependent packages 5total releases 18most recent commit 9 months ago

Sidechainnet ⭐ 256

An all-atom protein structure dataset for machine learning.

dependent packages 4total releases 11most recent commit 10 months ago

The 10 Most Depended On Python Protein Open Source Projects

Biopython ⭐ 3,918

Official git repository for Biopython (originally converted from CVS)

dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months ago

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

dependent packages 119total releases 86latest release September 22, 2023most recent commit 3 months ago

Bio ⭐ 51

Bioinformatics utilities.

dependent packages 84total releases 106latest release October 20, 2023most recent commit 3 months ago

Pronto ⭐ 212

A Python frontend to (Open Biomedical) Ontologies.

dependent packages 27total releases 76latest release August 17, 2023most recent commit 7 months ago

Biotite ⭐ 515

A comprehensive library for computational molecular biology

dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months ago

Esm ⭐ 2,577

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

dependent packages 14total releases 12latest release October 18, 2022most recent commit 3 months ago

Hgvs ⭐ 226

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

dependent packages 12total releases 104latest release November 21, 2022most recent commit 3 months ago

Omnipath ⭐ 32

Python client for the OmniPath web service

dependent packages 6total releases 9latest release November 20, 2023most recent commit 4 months ago

Pypdb ⭐ 258

A Python API for the RCSB Protein Data Bank (PDB)

dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months ago

Pdb Tools ⭐ 319

A dependency-free cross-platform swiss army knife for PDB files.

dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months ago

The 10 Latest Releases In Python Protein Open Source Projects

Moleculekit ⭐ 183

MoleculeKit: Your favorite molecule manipulation kit

dependent packages 1total releases 187latest release January 10, 2024most recent commit 3 months ago

Molecularnodes ⭐ 729

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months ago

Bakta ⭐ 365

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

total releases 37latest release November 29, 2023most recent commit 3 months ago

Omnipath ⭐ 32

Python client for the OmniPath web service

dependent packages 6total releases 9latest release November 20, 2023most recent commit 4 months ago

Beautiful Atoms ⭐ 102

Python module for drawing and rendering beautiful atoms and molecules using Blender.

total releases 7latest release November 15, 2023most recent commit 5 months ago

Omamer ⭐ 12

OMAmer - tree-driven and alignment-free protein assignment to sub-families

dependent packages 1total releases 17latest release November 10, 2023most recent commit 5 months ago

Localpdb ⭐ 36

Python package to manage protein structures and their annotations

total releases 10latest release November 05, 2023most recent commit 6 months ago

Mercat2 ⭐ 6

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

total releases 5latest release November 02, 2023most recent commit 5 months ago

Sidechainnet ⭐ 256

An all-atom protein structure dataset for machine learning.

dependent packages 4total releases 11latest release November 02, 2023most recent commit 10 months ago

Graphein ⭐ 932

Protein Graph Library

dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months ago