Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Protein Proteomics Open Source Projects

Open source projects categorized as Protein Proteomics
Categories > Protein
Categories > Proteomics
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18most recent commit 9 months agopypi pypdb} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Diann ⭐ 152
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
most recent commit 10 months ago
Philosopher ⭐ 104
A complete toolkit for shotgun proteomics data analysis
most recent commit 3 months ago
Famsa ⭐ 101
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
most recent commit 2 years ago
Plass ⭐ 99
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
most recent commit a year ago
Metamorpheus ⭐ 81
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
total releases 5most recent commit 3 months ago
Pyfeat ⭐ 68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
most recent commit 2 years ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Protti ⭐ 50
Picotti lab data analysis package.
total releases 7most recent commit 5 months ago
Peptide Shaker ⭐ 41
Interpretation of proteomics identification results
most recent commit 4 months ago
Proteus ⭐ 36
R package for analysing proteomics data
most recent commit a year ago
Deep Proteomics ⭐ 33
most recent commit 4 years ago
Babelomics ⭐ 31
most recent commit 6 years ago
Lfq Analyst ⭐ 27
The repo for LFQ-Analyst
most recent commit 4 months ago
Long Read Proteogenomics ⭐ 26
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
most recent commit a year ago
Omicsintegrator2 ⭐ 20
Prize-Collecting Steiner Forests for Interactomes
total releases 16most recent commit 5 years ago
Pia ⭐ 20
📚 🔬 PIA - Protein Inference Algorithms
most recent commit 4 months ago
Paw_pipeline ⭐ 18
A Comet-based, best practices proteomics pipeline.
most recent commit 2 years ago
Protigy ⭐ 17
Proteomics Toolset for Integrative Data Analysis
most recent commit 8 months ago
Plink2 ⭐ 17
pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.
most recent commit 2 years ago
Pride Inspector ⭐ 15
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
most recent commit 2 years ago
The 2 Most Depended On Protein Proteomics Open Source Projects
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 3 months agopypi sdrf-pipelines} Downloads
The 9 Latest Releases In Protein Proteomics Open Source Projects
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 3 months agopypi sdrf-pipelines} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Protti ⭐ 50
Picotti lab data analysis package.
total releases 7latest release July 01, 2022most recent commit 5 months ago
Scavager ⭐ 5
total releases 10latest release June 24, 2022most recent commit a year ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Photon ⭐ 11
PHOsphoproteomic dissecTiOn using Networks
total releases 11latest release March 06, 2019most recent commit 5 years ago
Omicsintegrator2 ⭐ 20
Prize-Collecting Steiner Forests for Interactomes
total releases 16latest release February 14, 2019most recent commit 5 years ago
Peptagram ⭐ 6
HTML5 interactive visualisations of proteomic experiments
total releases 7latest release March 10, 2014most recent commit 9 years ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.