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The Top 21 Protein Data Bank Open Source Projects

Open source projects categorized as Protein Data Bank
Categories > Protein Data Bank
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 3 months agopypi molecularnodes} Downloads
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18most recent commit 9 months agopypi pypdb} Downloads
Ribbon ⭐ 208
Ribbon diagrams of proteins in #golang.
most recent commit 3 years ago
Deepfri ⭐ 156
Deep functional residue identification
most recent commit a year ago
Proteinflow ⭐ 151
Versatile computational pipeline for processing protein structure data for deep learning applications.
most recent commit 4 months ago
Protein Science ⭐ 76
A collection of useful tutorials for Protein Science
most recent commit 9 years ago
Mmtf Pyspark ⭐ 64
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
total releases 14most recent commit a year ago
Mmtf Workshop 2018 ⭐ 53
Structural Bioinformatics Training Workshop & Hackathon 2018
most recent commit 2 years ago
Mmtf ⭐ 43
The specification of the MMTF format for biological structures
most recent commit 3 months ago
Nglviewer ⭐ 34
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
total releases 1most recent commit 10 months ago
Mmtf Genomics ⭐ 25
Methods for mapping genomic data onto 3D protein structure.
most recent commit 2 years ago
Ambertools Openmm Md ⭐ 24
Open Source, Mostly just clicking mouse to finish a simulation with Ambertools and OpenMM. It was designed to use locally but another notebook to finish the simulaiton on Colab was attached as well.
most recent commit 5 months ago
Mmtf Spark ⭐ 19
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
most recent commit 5 years ago
Hpdb ⭐ 19
PDB parser in Haskell
total releases 22most recent commit 5 years ago
Mmtf Proteomics ⭐ 11
Methods for mapping proteomics data on 3D protein structure.
most recent commit 4 years ago
Vaxdesign ⭐ 9
A script that computationally designs a vaccine
most recent commit 2 years ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1most recent commit 2 years ago
Pdb Stats ⭐ 7
Clickable PDB statistics: synchrotrons and MX software
most recent commit 5 months ago
Biojava Notebooks ⭐ 6
BioJava examples in Jupyter Notebooks
most recent commit 5 years ago
The 4 Most Depended On Protein Data Bank Open Source Projects
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
The 8 Latest Releases In Protein Data Bank Open Source Projects
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Nglviewer ⭐ 34
Visualize and interact with Protein Data Bank (pdb) and structural files in R and Shiny
total releases 1latest release June 01, 2021most recent commit 10 months ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1latest release April 28, 2020most recent commit 2 years ago
Hpdb ⭐ 19
PDB parser in Haskell
total releases 22latest release July 16, 2018most recent commit 5 years ago
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