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The Top 23 Pipeline Vcf Open Source Projects

Open source projects categorized as Pipeline Vcf
Categories > Data Processing > Pipeline
Categories > Science > Vcf
Somaticseq ⭐ 185
An ensemble approach to accurately detect somatic mutations using SomaticSeq
total releases 1most recent commit 6 months ago
Gcp Variant Transforms ⭐ 114
GCP Variant Transforms
most recent commit 2 years ago
Neopredpipe ⭐ 93
Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
most recent commit 7 months ago
H3agwas ⭐ 89
GWAS Pipeline for H3Africa
most recent commit 5 months ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 3 years ago
Selectiontools ⭐ 53
Pipeline to take VCF through to Selection Analysis.
most recent commit a year ago
Admixturepipeline ⭐ 46
A pipeline that accepts a VCF file to run through Admixture
most recent commit 5 months ago
Germline Dna ⭐ 23
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
most recent commit a year ago
Allbiotc2 ⭐ 22
Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
most recent commit 10 years ago
Sv Pipeline ⭐ 21
Pipeline for structural variation detection in cohorts
most recent commit 4 years ago
Variant_catalogue_pipeline ⭐ 20
Variant catalogue pipeline
most recent commit 4 months ago
Rnaseq Nf ⭐ 20
RNAseq analysis pipeline
most recent commit 2 years ago
Smurf ⭐ 19
most recent commit a year ago
Haplotypo ⭐ 17
This is the Haplotypo repository
most recent commit 8 months ago
Hrdetect Pipeline ⭐ 15
most recent commit 5 years ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 5 months ago
Variants2neoantigen ⭐ 14
a neoantigen calling pipeline begins from variants record file (MAF)
most recent commit 5 years ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit a year ago
Psap Pipeline ⭐ 12
most recent commit 6 years ago
Snpmatch ⭐ 9
A simple python library to identify the most likely strain from the population
most recent commit 3 months ago
Findsv ⭐ 9
Structural variant pipeline
most recent commit 4 years ago
Somaticwrapper ⭐ 8
Detect somatic variants from tumor and normal WGS/WXS data
most recent commit 9 months ago
Gatk For Microbes ⭐ 8
most recent commit 3 years ago
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