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The Top 23 Pipeline Variants Open Source Projects

Open source projects categorized as Pipeline Variants
Categories > Data Processing > Pipeline
Categories > Variants
Ios Twitter Image Pipeline ⭐ 1,838
Twitter Image Pipeline is a robust and performant image loading and caching framework for iOS clients
total releases 12most recent commit a year ago
Awesome Nextflow ⭐ 448
A curated list of nextflow based pipelines
most recent commit a year ago
Cnvkit ⭐ 435
Copy number variant detection from targeted DNA sequencing
total releases 50most recent commit 4 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8most recent commit 6 months ago
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
most recent commit 3 years ago
Gwas_scripts ⭐ 127
Codebook from my GWAS cookbook
most recent commit 2 years ago
Gcp Variant Transforms ⭐ 114
GCP Variant Transforms
most recent commit 2 years ago
Fermikit ⭐ 91
De novo assembly based variant calling pipeline for Illumina short reads
most recent commit 3 years ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 2 years ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Sentieon Scripts ⭐ 53
Helper scripts for biological data processing from Sentieon
most recent commit 4 months ago
Bactmap ⭐ 45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
most recent commit 7 months ago
Mtoolbox ⭐ 44
A bioinformatics pipeline to analyze mtDNA from NGS data
most recent commit 4 years ago
Needlestack ⭐ 39
Multi-sample somatic variant caller
most recent commit 4 years ago
Mip ⭐ 36
Mutation Identification Pipeline. Read the latest documentation:
most recent commit 4 months ago
Iarc Nf ⭐ 35
List of IARC bioinformatics nextflow pipelines
most recent commit a year ago
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
Gotcloud ⭐ 29
Genomes on the Cloud, Mapping & Variant Calling Pipelines
most recent commit 7 years ago
Persvade ⭐ 27
perSVade: personalized Structural Variation detection
most recent commit 8 months ago
Deepvariant ⭐ 26
Deep Variant as a Nextflow pipeline
most recent commit 4 years ago
Variant_calling_pipeline ⭐ 25
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framework in Python.
most recent commit 10 years ago
Gbs Snp Crop ⭐ 24
GBS SNP Calling Reference Optional Pipeline
most recent commit 2 years ago
The 4 Latest Releases In Pipeline Variants Open Source Projects
Cnvkit ⭐ 435
Copy number variant detection from targeted DNA sequencing
total releases 50latest release February 24, 2023most recent commit 4 months ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8latest release November 19, 2020most recent commit 6 months ago
Maliampi ⭐ 19
Maximum Likelihood Amplicon Pipeline
total releases 1latest release April 19, 2019most recent commit 7 months ago
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