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The Top 23 Pipeline Reproducibility Open Source Projects

Open source projects categorized as Pipeline Reproducibility
Categories > Data Processing > Pipeline
Categories > Science > Reproducibility
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47most recent commit 6 months ago
Targets ⭐ 860
Function-oriented Make-like declarative workflows for R
most recent commit 18 days ago
Open Solution Home Credit ⭐ 444
Open solution to the Home Credit Default Risk challenge 🏡
most recent commit 2 years ago
Dna Seq Gatk Variant Calling ⭐ 138
This Snakemake pipeline implements the GATK best-practices workflow
most recent commit 3 years ago
Steppy ⭐ 134
Lightweight, Python library for fast and reproducible experimentation 🔬
total releases 16most recent commit 5 years ago
Tarchetypes ⭐ 108
Archetypes for targets and pipelines
most recent commit 3 months ago
Vistrails ⭐ 92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
most recent commit 6 years ago
Targets Tutorial ⭐ 90
Short course on the targets R package
most recent commit 5 months ago
Repeatr ⭐ 62
Repeatr: Reproducible, hermetic Computation. Provision containers from Content-Addressable snapshots; run using familiar containers (e.g. runc); store outputs in Content-Addressable form too! JSON API; connect your own pipelines! (Or, use github.com/polydawn/stellar for pipelines!)
total releases 1most recent commit 4 years ago
Targets Shiny ⭐ 60
Example Shiny app containing a targets pipeline.
most recent commit 7 months ago
Drake Examples ⭐ 58
Example workflows for the drake R package
most recent commit 2 years ago
Drake ⭐ 57
The user manual for the drake R package
most recent commit 3 years ago
Halfpipe ⭐ 56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
most recent commit 3 months ago
Open Solution Googleai Object Detection ⭐ 46
Open solution to the Google AI Object Detection Challenge 🍁
most recent commit 2 years ago
Targets Minimal ⭐ 45
A minimal example data analysis project with the targets R package
most recent commit 2 years ago
Catalyst Rl ⭐ 41
total releases 1most recent commit 3 years ago
Classification ⭐ 35
Catalyst.Classification
most recent commit 3 years ago
Demo Bank Customer Churn ⭐ 30
Demo DVC project training a classification model on tabular data
most recent commit 9 months ago
Meetups ⭐ 28
Content for ML REPA MeetUps
most recent commit 4 years ago
Segmentation ⭐ 27
Catalyst.Segmentation
most recent commit 3 years ago
Rnatoy ⭐ 24
A proof of concept RNA-Seq pipeline with Nextflow
most recent commit 4 years ago
Targets Four Minutes ⭐ 24
Get started with the {targets} R package in four minutes
most recent commit 2 years ago
Deepnlg ⭐ 19
A systematic comparison between pipeline and end-to-end architectures in the RDF-to-text task
most recent commit 3 years ago
The 8 Latest Releases In Pipeline Reproducibility Open Source Projects
Curare ⭐ 6
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
total releases 5latest release November 16, 2023most recent commit 5 months ago
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 6 months ago
Smartpipeline ⭐ 16
A framework for rapid development of robust data pipelines following a simple design pattern
total releases 9latest release September 27, 2023most recent commit 4 months ago
Kts ⭐ 10
Interactive ML Toolset
total releases 146latest release April 14, 2020most recent commit 4 years ago
Catalyst Rl ⭐ 41
total releases 1latest release March 21, 2020most recent commit 3 years ago
Steppy ⭐ 134
Lightweight, Python library for fast and reproducible experimentation :microscope:
total releases 16latest release November 23, 2018most recent commit 5 years ago
Walrus ⭐ 11
Containerized data analysis pipelines
total releases 1latest release June 13, 2018most recent commit 6 years ago
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