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The Top 23 R Pipeline Workflow Open Source Projects

Open source projects categorized as R Pipeline Workflow
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47most recent commit 6 months ago
Targets ⭐ 860
Function-oriented Make-like declarative workflows for R
most recent commit 20 days ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Tarchetypes ⭐ 108
Archetypes for targets and pipelines
most recent commit 3 months ago
Targets Tutorial ⭐ 90
Short course on the targets R package
most recent commit 5 months ago
Pipeliner ⭐ 61
Machine learning pipelines for R.
total releases 2most recent commit 7 years ago
Targets Shiny ⭐ 60
Example Shiny app containing a targets pipeline.
most recent commit 7 months ago
Drake Examples ⭐ 58
Example workflows for the drake R package
most recent commit 2 years ago
Drake ⭐ 57
The user manual for the drake R package
most recent commit 3 years ago
Rmonad ⭐ 54
Pipelines you can compute on
total releases 6most recent commit 3 years ago
Targets Minimal ⭐ 45
A minimal example data analysis project with the targets R package
most recent commit 2 years ago
Sigflow ⭐ 25
Sigflow: Streamline Analysis Workflows for Mutational Signatures
most recent commit 6 months ago
Stackr ⭐ 17
stackr: an R package to run stacks software pipeline
most recent commit 3 years ago
Handwriter ⭐ 17
Forensic Handwriting Analysis Pipeline in R - Please download our stable version from CRAN using 'install.packages("handwriter")'
most recent commit 5 months ago
Targetsketch ⭐ 15
Sketch a pipeline of targets in an interactive web app
most recent commit 7 months ago
Exprso ⭐ 15
An R package to rapidly build and deploy supervised machine learning workflows
total releases 9most recent commit 5 years ago
Rnaseq ⭐ 13
RNA-seq, QC and differential analysis pipeline
most recent commit 4 months ago
Mandrake ⭐ 11
📖🐉- Bring reading the manual 📖 closer to your drake 🐉 workflow 🔥
most recent commit 3 years ago
Poma ⭐ 8
📦 Tools for Omics Data Analysis
most recent commit 3 months ago
Finemapr ⭐ 7
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
most recent commit 3 years ago
Targets Keras ⭐ 7
An example Keras pipeline with the targets R package
most recent commit 3 years ago
Epigenomics_cwl ⭐ 7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
most recent commit 7 years ago
Targets Design ⭐ 5
targets R package design specification
most recent commit 2 years ago
The 4 Latest Releases In R Pipeline Workflow Open Source Projects
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 6 months ago
Rmonad ⭐ 54
Pipelines you can compute on
total releases 6latest release February 14, 2020most recent commit 3 years ago
Exprso ⭐ 15
An R package to rapidly build and deploy supervised machine learning workflows
total releases 9latest release March 23, 2019most recent commit 5 years ago
Pipeliner ⭐ 61
Machine learning pipelines for R.
total releases 2latest release December 19, 2016most recent commit 7 years ago
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