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The Top 23 R Pipeline Open Source Projects

Open source projects categorized as R Pipeline
Papermill ⭐ 5,513
📚 Parameterize, execute, and analyze notebooks
dependent packages 171total releases 74most recent commit 3 months agopypi papermill} Downloads
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47most recent commit 5 months ago
Targets ⭐ 860
Function-oriented Make-like declarative workflows for R
most recent commit 13 days ago
Corrr ⭐ 580
Explore correlations in R
dependent packages 6total releases 11most recent commit 3 months ago
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Zumis ⭐ 232
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
most recent commit a year ago
Snapatac ⭐ 227
Analysis Pipeline for Single Cell ATAC-seq
most recent commit 2 years ago
Piper ⭐ 151
Multi-Paradigm Pipeline Implementation
most recent commit 8 years ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Mlr3pipelines ⭐ 127
Dataflow Programming for Machine Learning in R
most recent commit 3 months ago
Gwas_scripts ⭐ 127
Codebook from my GWAS cookbook
most recent commit 2 years ago
Tarchetypes ⭐ 108
Archetypes for targets and pipelines
most recent commit 3 months ago
Cargo Deny Action ⭐ 100
❌ GitHub Action for cargo-deny 🦀
most recent commit 3 months ago
Targets Tutorial ⭐ 90
Short course on the targets R package
most recent commit 5 months ago
Intubate ⭐ 73
<||> Interfaces to Popular R Functions for Data Science Pipelines, and More
most recent commit 8 years ago
Opencyto ⭐ 71
A package that provides data analysis pipeline for flow cytometry.
most recent commit a year ago
Scatac Pro ⭐ 64
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
most recent commit 10 months ago
Pipeliner ⭐ 61
Machine learning pipelines for R.
total releases 2most recent commit 7 years ago
Targets Shiny ⭐ 60
Example Shiny app containing a targets pipeline.
most recent commit 7 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Drake Examples ⭐ 58
Example workflows for the drake R package
most recent commit 2 years ago
Meteore ⭐ 58
Automatic DNA methylation detection from nanopore tools and their consensus model
most recent commit a year ago
Drake ⭐ 57
The user manual for the drake R package
most recent commit 3 years ago
The 5 Most Depended On R Pipeline Open Source Projects
Papermill ⭐ 5,513
📚 Parameterize, execute, and analyze notebooks
dependent packages 171total releases 74latest release November 01, 2023most recent commit 3 months agopypi papermill} Downloads
Corrr ⭐ 580
Explore correlations in R
dependent packages 6total releases 11latest release August 16, 2022most recent commit 3 months ago
Rqdatatable ⭐ 38
Implement the rquery piped query algebra in R using data.table. Distributed under choice of GPL-2 or GPL-3 license.
dependent packages 4total releases 28latest release August 21, 2023most recent commit 8 months ago
Nozzle ⭐ 55
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
dependent packages 2total releases 4latest release June 23, 2022most recent commit 8 years ago
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 5 months ago
The 10 Latest Releases In R Pipeline Open Source Projects
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 5 months ago
Papermill ⭐ 5,513
📚 Parameterize, execute, and analyze notebooks
dependent packages 171total releases 74latest release November 01, 2023most recent commit 3 months agopypi papermill} Downloads
Rqdatatable ⭐ 38
Implement the rquery piped query algebra in R using data.table. Distributed under choice of GPL-2 or GPL-3 license.
dependent packages 4total releases 28latest release August 21, 2023most recent commit 8 months ago
Tomicsvis ⭐ 50
Transcriptomics Visualization R package.
total releases 1latest release July 06, 2023most recent commit 3 months ago
Mikropml ⭐ 48
User-Friendly R Package for Supervised Machine Learning Pipelines
total releases 10latest release October 16, 2022most recent commit 8 months ago
Corrr ⭐ 580
Explore correlations in R
dependent packages 6total releases 11latest release August 16, 2022most recent commit 3 months ago
Nozzle ⭐ 55
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
dependent packages 2total releases 4latest release June 23, 2022most recent commit 8 years ago
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
total releases 4latest release May 18, 2022most recent commit 2 years ago
Simplecache ⭐ 30
Simplified R caching for reproducible big data projects
total releases 4latest release April 17, 2021most recent commit 3 years ago
Rescue ⭐ 8
Bootstrap imputation for scRNAseq data
total releases 1latest release July 18, 2020most recent commit 4 years ago
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