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The Top 23 R Phylogenetics Open Source Projects

Open source projects categorized as R Phylogenetics
Categories > Phylogenetics
Phangorn ⭐ 196
Phylogenetic analysis in R
dependent packages 68total releases 58most recent commit 3 months ago
Babette ⭐ 40
babette is an R package to work with BEAST2
most recent commit 7 months ago
Get_phylomarkers ⭐ 39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
most recent commit a year ago
Phylotar ⭐ 24
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
total releases 1most recent commit 9 months ago
Phylobase ⭐ 16
An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
dependent packages 24total releases 15most recent commit 3 months ago
Treetools ⭐ 15
Create, modify and analyse phylogenetic trees in R
dependent packages 3total releases 19most recent commit 3 months ago
Beautier ⭐ 13
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
dependent packages 6total releases 14most recent commit 4 months ago
Rnexml ⭐ 13
Implementing semantically rich NeXML I/O in R
most recent commit a year ago
Multree ⭐ 12
Performs MCMCglmm on multiple phylogenetic trees
most recent commit 3 months ago
Datelife ⭐ 11
R package containing datelife's core functionality
total releases 6most recent commit 4 months ago
Phylopath ⭐ 10
Perform phylogenetic path analysis in R.
total releases 12most recent commit 6 months ago
Phylosamp ⭐ 10
The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.
total releases 1most recent commit a year ago
Graphphylo ⭐ 9
visualization of phylogenetic output files
most recent commit 6 months ago
Phylogenetics ⭐ 8
CRAN Task View: Phylogenetics
most recent commit 3 months ago
Rncl ⭐ 8
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
dependent packages 2total releases 8most recent commit a year ago
Sensiphy ⭐ 8
R package to perform sensitivity analysis for comparative methods
total releases 7most recent commit 4 years ago
Course R Mol Data ⭐ 8
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
most recent commit 3 months ago
Aphylo ⭐ 6
Statistical inference of genetic functions in phylogenetic trees
total releases 4most recent commit 6 months ago
Phylter ⭐ 6
Detection of outlier genes and species in phylogenomics
total releases 3most recent commit 5 months ago
Nltt ⭐ 6
Repository for the R nLTT package
dependent packages 4total releases 10most recent commit 8 months ago
Phylodiv ⭐ 6
Phylogenetic Biodiversity Query Tools
most recent commit 4 years ago
Treelikeness ⭐ 6
Developing a statistic to test tree likeness and identify genes that don't fit the model.
most recent commit 3 years ago
Daisieprep ⭐ 6
Extracts phylogenetic island community data from phylogenetic trees
total releases 1most recent commit 4 months ago
The 7 Most Depended On R Phylogenetics Open Source Projects
Phangorn ⭐ 196
Phylogenetic analysis in R
dependent packages 68total releases 58latest release January 23, 2023most recent commit 3 months ago
Phylobase ⭐ 16
An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data
dependent packages 24total releases 15latest release March 01, 2020most recent commit 3 months ago
Beautier ⭐ 13
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
dependent packages 6total releases 14latest release November 02, 2023most recent commit 4 months ago
Nltt ⭐ 6
Repository for the R nLTT package
dependent packages 4total releases 10latest release January 13, 2020most recent commit 8 months ago
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Treetools ⭐ 15
Create, modify and analyse phylogenetic trees in R
dependent packages 3total releases 19latest release March 25, 2022most recent commit 3 months ago
Rncl ⭐ 8
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
dependent packages 2total releases 8latest release March 18, 2022most recent commit a year ago
The 10 Latest Releases In R Phylogenetics Open Source Projects
Beautier ⭐ 13
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
dependent packages 6total releases 14latest release November 02, 2023most recent commit 4 months ago
Aphylo ⭐ 6
Statistical inference of genetic functions in phylogenetic trees
total releases 4latest release September 07, 2023most recent commit 6 months ago
Treesearch ⭐ 5
R package for phylogenetic tree search under custom optimality criteria
dependent packages 3total releases 23latest release August 26, 2023most recent commit 8 months ago
Phylter ⭐ 6
Detection of outlier genes and species in phylogenomics
total releases 3latest release August 24, 2023most recent commit 5 months ago
Datelife ⭐ 11
R package containing datelife's core functionality
total releases 6latest release June 19, 2023most recent commit 4 months ago
Daisieprep ⭐ 6
Extracts phylogenetic island community data from phylogenetic trees
total releases 1latest release April 25, 2023most recent commit 4 months ago
Phangorn ⭐ 196
Phylogenetic analysis in R
dependent packages 68total releases 58latest release January 23, 2023most recent commit 3 months ago
Scistreer ⭐ 5
R/Rcpp implementation of the ScisTree algorithm
total releases 2latest release November 25, 2022most recent commit 10 months ago
Treetools ⭐ 15
Create, modify and analyse phylogenetic trees in R
dependent packages 3total releases 19latest release March 25, 2022most recent commit 3 months ago
Rncl ⭐ 8
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
dependent packages 2total releases 8latest release March 18, 2022most recent commit a year ago
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