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The Top 23 Perl Variants Open Source Projects

Open source projects categorized as Perl Variants
Ensembl Vep ⭐ 410
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
most recent commit 3 months ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Vcf2maf ⭐ 305
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
most recent commit a year ago
Vardict ⭐ 182
VarDict
most recent commit 4 months ago
Loftee ⭐ 153
most recent commit 10 months ago
Vardictjava ⭐ 125
VarDict Java port
most recent commit 4 months ago
Learning_vcf_file ⭐ 122
Learning the Variant Call Format
most recent commit 7 months ago
Vep_plugins ⭐ 121
Plugins for the Ensembl Variant Effect Predictor (VEP)
most recent commit 3 months ago
Clinsv ⭐ 51
Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
most recent commit a year ago
Mip ⭐ 36
Mutation Identification Pipeline. Read the latest documentation:
most recent commit 5 months ago
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
Isown ⭐ 28
most recent commit 4 years ago
16gt ⭐ 26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
most recent commit 4 years ago
Variant Filter ⭐ 25
A false-positive filter for variants called from massively parallel sequencing
most recent commit 7 years ago
Gbs Snp Crop ⭐ 24
GBS SNP Calling Reference Optional Pipeline
most recent commit 2 years ago
Svscore ⭐ 23
Prioritize structural variants based on CADD scores
most recent commit 4 years ago
Uorfs ⭐ 17
most recent commit 4 years ago
Fonts ⭐ 16
X11 bitmap terminal fonts, and one specifically for crawl
most recent commit 6 months ago
Garfield Ngs ⭐ 16
GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
most recent commit 5 years ago
Malware Phylogeny ⭐ 14
malware phylogeny for WSO web shell, Shellbot IRC bot and algorithm
most recent commit 2 years ago
Variantdb_challenge ⭐ 14
Finding a scalable alternative to the VCF File for genomics analysis
most recent commit 7 years ago
Computational Genome Analysis ⭐ 11
Website for Computational Exome and Genome Analysis
most recent commit 5 years ago
Microhaplot ⭐ 11
microhaplotype visualizer and analyzer
total releases 1most recent commit 3 years ago
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