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The Top 23 Perl Sequencing Open Source Projects

Open source projects categorized as Perl Sequencing
Categories > Science > Sequencing
Sars Cov 2_sequencing ⭐ 333
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
most recent commit a year ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Mirdeep2 ⭐ 120
Discovering known and novel miRNAs from small RNA sequencing data
most recent commit 5 months ago
Bigsdb ⭐ 53
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
most recent commit 3 months ago
Clinsv ⭐ 51
Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
most recent commit a year ago
Ascatngs ⭐ 46
Somatic copy number analysis using WGS paired end wholegenome sequencing
most recent commit 3 years ago
Snpsplit ⭐ 43
Allele-specific alignment sorting
most recent commit a year ago
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Cnvcaller ⭐ 37
most recent commit 3 months ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Rnaseq ⭐ 28
RNASeq pipeline
most recent commit 4 years ago
Lrsday ⭐ 27
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
most recent commit 7 months ago
Qc3 ⭐ 27
QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
most recent commit 8 years ago
Ebcall ⭐ 26
an empirical Bayesian framework for mutation detection from cancer genome sequencing data
most recent commit 8 years ago
Variant Filter ⭐ 25
A false-positive filter for variants called from massively parallel sequencing
most recent commit 7 years ago
Dna Me Pipeline ⭐ 24
DCC/DAC methylation pipeline source
most recent commit 6 years ago
Bioinf2019 ⭐ 23
most recent commit 5 years ago
Monod2 ⭐ 21
MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
most recent commit 5 years ago
Sim It ⭐ 20
Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
most recent commit 4 months ago
Exstra ⭐ 20
Expanded STR algorithm for Illumina sequencing data
most recent commit 2 years ago
Bear ⭐ 19
A Better Sequencing Simulator for Metagenomics
most recent commit 4 years ago
Genoo ⭐ 18
A Modern Perl Framework for High Throughput Sequencing analysis
dependent packages 1total releases 11most recent commit 4 years ago
Plasmidseeker ⭐ 18
A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
most recent commit 3 years ago
The 5 Latest Releases In Perl Sequencing Open Source Projects
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9latest release September 19, 2023most recent commit 5 months ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 9 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
Mlst_check ⭐ 14
Multilocus sequence typing by blast using the schemes from PubMLST
total releases 13latest release March 03, 2017most recent commit 3 years ago
Genoo ⭐ 18
A Modern Perl Framework for High Throughput Sequencing analysis
dependent packages 1total releases 11latest release August 26, 2016most recent commit 4 years ago
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