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The Top 23 Perl Pipeline Open Source Projects

Open source projects categorized as Perl Pipeline
Edta ⭐ 294
Extensive de-novo TE Annotator
most recent commit 3 months ago
Shovill ⭐ 104
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
most recent commit 4 years ago
Rnaseqdb ⭐ 83
most recent commit 6 years ago
Ni ⭐ 81
Say "ni" to data of any size
most recent commit a year ago
Orthomcl Pipeline ⭐ 55
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0
most recent commit 4 years ago
Ensembl Hive ⭐ 50
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
most recent commit 3 months ago
Impact Pipeline ⭐ 47
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
most recent commit 3 years ago
Get_phylomarkers ⭐ 39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
most recent commit a year ago
Mirna ⭐ 38
microRNA profiling pipeline
most recent commit 5 years ago
Gawn ⭐ 37
Genome Annotation Without Nightmares
most recent commit 6 months ago
Mip ⭐ 36
Mutation Identification Pipeline. Read the latest documentation:
most recent commit 4 months ago
Px ⭐ 36
A Linux tool that provides progress and status information for command pipelines.
most recent commit 7 years ago
Scripts ⭐ 33
Metagenomic pipeline and other general scripts used in the lab.
most recent commit 2 years ago
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Showspeed ⭐ 28
print I/O activity of process, files, or network.
most recent commit 4 years ago
Rnaseq ⭐ 28
RNASeq pipeline
most recent commit 4 years ago
Bitacora ⭐ 27
BITACORA: A Bioinformatics tool for gene family annotation
most recent commit 5 months ago
Perl For Bioinformatics ⭐ 26
An attempt to help anyone interested in using Perl for Bioinformatics
most recent commit 4 years ago
Dna Me Pipeline ⭐ 24
DCC/DAC methylation pipeline source
most recent commit 6 years ago
Gbs Snp Crop ⭐ 24
GBS SNP Calling Reference Optional Pipeline
most recent commit 2 years ago
Planttribes ⭐ 23
PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
most recent commit a year ago
Gatb Minia Pipeline ⭐ 22
GATB Minia assembly pipeline
most recent commit a year ago
The 2 Latest Releases In Perl Pipeline Open Source Projects
Markdent ⭐ 12
An event-based Markdown parser toolkit
dependent packages 4total releases 40latest release March 21, 2021most recent commit 2 years ago
Perl Powershell ⭐ 5
total releases 1latest release July 25, 2016most recent commit 8 years ago
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