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The Top 23 Python Protein Pdb Open Source Projects

Open source projects categorized as Python Protein Pdb
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 3 months agopypi molecularnodes} Downloads
Prospr ⭐ 407
ProSPr: Protein Structure Prediction
most recent commit 2 years ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 4 months agopypi pdb-tools} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18most recent commit 9 months agopypi pypdb} Downloads
Deepfri ⭐ 156
Deep functional residue identification
most recent commit a year ago
Deeprank ⭐ 145
This repository has been integrated in https://github.com/DeepRank/deeprank2
total releases 3most recent commit 5 months ago
Proteinsecondarystructure Cnn ⭐ 93
Protein Secondary Structure predictor using Convolutional Neural Networks
most recent commit 9 months ago
Atomium ⭐ 92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
total releases 4most recent commit a year ago
Protein Science ⭐ 76
A collection of useful tutorials for Protein Science
most recent commit 9 years ago
Pdbtools ⭐ 68
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
most recent commit 5 years ago
Coronavirus_structural_task_force ⭐ 60
Repository for the molecular structures related with Corona virusses and their re-processing
most recent commit a year ago
Dove ⭐ 52
A Deep-learning based dOcking decoy eValuation mEthod
most recent commit a year ago
Proteingcn ⭐ 47
ProteinGCN: Protein model quality assessment using Graph Convolutional Networks
most recent commit 3 years ago
Deepdrug3d ⭐ 46
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
most recent commit 3 years ago
Pylipid ⭐ 37
A python toolkit for analysing membrane protein-lipid interactions.
total releases 57most recent commit 2 years ago
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10most recent commit 6 months ago
Caviar ⭐ 36
// PROJECT PAUSED FOR NOW (lack of capacity) // Protein cavity identification and automatic subpocket decomposition
most recent commit a year ago
Ramanet ⭐ 31
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
most recent commit 2 years ago
Pdb Benchmarks ⭐ 26
Benchmarking common tasks on proteins in various languages and packages
most recent commit 3 years ago
Onionnet ⭐ 24
A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
most recent commit 3 years ago
Pdbcolor ⭐ 24
Python code to color a PDB structure based on parameters from a multiple sequence alignment
most recent commit 8 months ago
Glycosylator ⭐ 23
Framework for the rapid modeling glycans and glycoproteins.
most recent commit 7 months ago
The 5 Most Depended On Python Protein Pdb Open Source Projects
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Pssmgen ⭐ 9
Generates consistent PSSM and/or PDB files for protein-protein complexes
dependent packages 1total releases 4latest release February 05, 2021most recent commit 2 years agopypi PSSMGen} Downloads
The 10 Latest Releases In Python Protein Pdb Open Source Projects
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10latest release November 05, 2023most recent commit 6 months ago
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Deeprank ⭐ 145
This repository has been integrated in https://github.com/DeepRank/deeprank2
total releases 3latest release February 03, 2022most recent commit 5 months ago
Atomium ⭐ 92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
total releases 4latest release November 29, 2021most recent commit a year ago
Pylipid ⭐ 37
A python toolkit for analysing membrane protein-lipid interactions.
total releases 57latest release July 08, 2021most recent commit 2 years ago
Pssmgen ⭐ 9
Generates consistent PSSM and/or PDB files for protein-protein complexes
dependent packages 1total releases 4latest release February 05, 2021most recent commit 2 years agopypi PSSMGen} Downloads
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