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The Top 23 Protein Pdb Open Source Projects

Open source projects categorized as Protein Pdb
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 3 months agopypi molecularnodes} Downloads
Prospr ⭐ 407
ProSPr: Protein Structure Prediction
most recent commit 2 years ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 4 months agopypi pdb-tools} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18most recent commit 9 months agopypi pypdb} Downloads
Ribbon ⭐ 208
Ribbon diagrams of proteins in #golang.
most recent commit 3 years ago
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Deepfri ⭐ 156
Deep functional residue identification
most recent commit a year ago
Deeprank ⭐ 145
This repository has been integrated in https://github.com/DeepRank/deeprank2
total releases 3most recent commit 5 months ago
Icn3d ⭐ 135
web-based protein structure viewer and analysis tool interactively or in batch mode
dependent packages 2total releases 140most recent commit 3 months agonpm icn3d} Downloads
Dssp ⭐ 113
Application to assign secondary structure to proteins
most recent commit 5 months ago
Proteinsecondarystructure Cnn ⭐ 93
Protein Secondary Structure predictor using Convolutional Neural Networks
most recent commit 9 months ago
Atomium ⭐ 92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
total releases 4most recent commit a year ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 4 months ago
Protein Science ⭐ 76
A collection of useful tutorials for Protein Science
most recent commit 9 years ago
Pdbtools ⭐ 68
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
most recent commit 5 years ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
most recent commit 3 months ago
Coronavirus_structural_task_force ⭐ 60
Repository for the molecular structures related with Corona virusses and their re-processing
most recent commit a year ago
Vscoding Sequence ⭐ 56
VSCode Extension for interactively visualising protein structure data in the editor
most recent commit a year ago
Deepchem Gui ⭐ 53
A simple web GUI for DeepChem
most recent commit 5 months ago
Dove ⭐ 52
A Deep-learning based dOcking decoy eValuation mEthod
most recent commit a year ago
Cath Tools ⭐ 51
Protein structure comparison tools such as SSAP and SNAP
most recent commit 5 months ago
Jolecule ⭐ 48
Javascript viewer for proteins and DNA with animated views
most recent commit 9 months ago
The 8 Most Depended On Protein Pdb Open Source Projects
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Rcsb Saguaro App ⭐ 7
RCSB Saguaro 1D Feature Viewer Web App
dependent packages 5total releases 324latest release December 08, 2023most recent commit 3 months agonpm @rcsb/rcsb-saguaro-app} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Strucmotif Search ⭐ 8
Real-time structure motif searching in protein 3D structures using an inverted index strategy
dependent packages 2total releases 48latest release August 25, 2023most recent commit 4 months ago
Icn3d ⭐ 135
web-based protein structure viewer and analysis tool interactively or in batch mode
dependent packages 2total releases 140latest release November 08, 2023most recent commit 3 months agonpm icn3d} Downloads
Pssmgen ⭐ 9
Generates consistent PSSM and/or PDB files for protein-protein complexes
dependent packages 1total releases 4latest release February 05, 2021most recent commit 2 years agopypi PSSMGen} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
The 10 Latest Releases In Protein Pdb Open Source Projects
Rcsb Saguaro App ⭐ 7
RCSB Saguaro 1D Feature Viewer Web App
dependent packages 5total releases 324latest release December 08, 2023most recent commit 3 months agonpm @rcsb/rcsb-saguaro-app} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Icn3d ⭐ 135
web-based protein structure viewer and analysis tool interactively or in batch mode
dependent packages 2total releases 140latest release November 08, 2023most recent commit 3 months agonpm icn3d} Downloads
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10latest release November 05, 2023most recent commit 5 months ago
Strucmotif Search ⭐ 8
Real-time structure motif searching in protein 3D structures using an inverted index strategy
dependent packages 2total releases 48latest release August 25, 2023most recent commit 4 months ago
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Fragalysis Api ⭐ 9
A python API for fragalysis (fragalysis.diamond.ac.uk)
total releases 3latest release December 05, 2022most recent commit 2 years ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
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