Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Workflow Ngs Open Source Projects

Open source projects categorized as Workflow Ngs
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Iskylims ⭐ 61
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
most recent commit 3 months ago
Viral Pipelines ⭐ 48
viral-ngs: complete pipelines
most recent commit 4 months ago
Systempiper ⭐ 45
Project Website:
most recent commit 6 months ago
Dnascan ⭐ 36
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
most recent commit 2 years ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Atacseq_pipeline ⭐ 25
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
most recent commit 3 months ago
Cwl Ngs Workflows Cbb ⭐ 23
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
most recent commit 10 months ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 3 months ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Kgwasflow ⭐ 19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
most recent commit 7 months ago
Toggle ⭐ 18
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
most recent commit a year ago
Docker4seq ⭐ 18
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
most recent commit 7 months ago
Hgtseq ⭐ 17
A pipeline to investigate horizontal gene transfer from NGS data
most recent commit a year ago
Crisprseq ⭐ 17
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
most recent commit 3 months ago
Galaksio ⭐ 17
An easy-to-use way for running Galaxy workflows.
most recent commit 4 years ago
Ngs Test Data ⭐ 14
A workflow for creating small NGS test data sets, useful for continuous integration.
most recent commit 4 years ago
Rctl ⭐ 14
A set of command line tools based on R and JavaScript.
most recent commit 4 years ago
Rnaseq ⭐ 13
RNA-seq, QC and differential analysis pipeline
most recent commit 4 months ago
Lepmap2_workflow ⭐ 12
Pipeline for linkage map construction from NGS data
most recent commit a year ago
The 2 Latest Releases In Workflow Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.