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The Top 23 Sequencing Ngs Open Source Projects

Open source projects categorized as Sequencing Ngs
Categories > Science > Ngs
Categories > Science > Sequencing
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Ngstools ⭐ 142
Programs to analyse NGS data for population genetics purposes
most recent commit 8 months ago
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90most recent commit 3 months agopypi sequana} Downloads
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Crispresso ⭐ 110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dependent packages 1total releases 51most recent commit 5 years agopypi CRISPResso} Downloads
Ngscheckmate ⭐ 106
Software program for checking sample matching for NGS data
most recent commit 8 months ago
Gencore ⭐ 103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
most recent commit 6 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Ngs Pipe ⭐ 87
NGS-pipe: next-generation sequencing pipelines for precision oncology
most recent commit 5 years ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Opengene.jl ⭐ 61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
most recent commit 2 years ago
The 7 Most Depended On Sequencing Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 3 months agopypi sequana} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Crispresso ⭐ 110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dependent packages 1total releases 51latest release June 30, 2018most recent commit 5 years agopypi CRISPResso} Downloads
Ngs ⭐ 17
Next generation sequencing (NGS/HTS) tools.
dependent packages 1total releases 9latest release June 22, 2015most recent commit 4 years ago
Ngstk ⭐ 15
A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
dependent packages 1total releases 5latest release November 22, 2018most recent commit 5 years ago
The 10 Latest Releases In Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 3 months agopypi sequana} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Nsearch ⭐ 10
Next-Generation Sequencing (NGS) Data Processing Tool & Library
total releases 1latest release March 12, 2022most recent commit a year ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1latest release June 18, 2021most recent commit 7 months ago
Seqcluster ⭐ 34
small RNA analysis from NGS data
total releases 38latest release October 14, 2020most recent commit 2 years ago
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