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The Top 23 Pipeline Ngs Open Source Projects

Open source projects categorized as Pipeline Ngs
Categories > Science > Ngs
Categories > Data Processing > Pipeline
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Cloud Pipeline ⭐ 137
Cloud agnostic genomics analysis, scientific computation and storage platform
most recent commit 3 months ago
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90most recent commit 3 months agopypi sequana} Downloads
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Rapt ⭐ 51
Read Assembly and Annotation Pipeline Tool
most recent commit 8 months ago
Viral Pipelines ⭐ 48
viral-ngs: complete pipelines
most recent commit 3 months ago
Impact Pipeline ⭐ 47
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
most recent commit 3 years ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Pipeliner ⭐ 44
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
most recent commit 9 months ago
Struo2 ⭐ 42
Scalable creating/updating of metagenome profiling databases
most recent commit a year ago
Migec ⭐ 40
A RepSeq processing swiss-knife
most recent commit 10 months ago
Struo ⭐ 40
Ley Lab MetaGenome Profiler DataBase generator
most recent commit a year ago
Needlestack ⭐ 39
Multi-sample somatic variant caller
most recent commit 4 years ago
Ngstools ⭐ 37
Next-Generation Sequencing(NGS) toolkits.
most recent commit 8 years ago
Dnascan ⭐ 36
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
most recent commit 2 years ago
Grape Nf ⭐ 35
An automated RNA-seq pipeline using Nextflow
most recent commit 10 months ago
Iarc Nf ⭐ 35
List of IARC bioinformatics nextflow pipelines
most recent commit a year ago
The 2 Most Depended On Pipeline Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 3 months agopypi sequana} Downloads
The 7 Latest Releases In Pipeline Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 3 months agopypi sequana} Downloads
Monsda ⭐ 10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
total releases 14latest release November 26, 2023most recent commit 5 months ago
Assnake ⭐ 10
Snakemake based framework for NGS data analysis and management
total releases 9latest release March 26, 2020most recent commit 3 years ago
Cirrus Ngs ⭐ 5
total releases 1latest release May 25, 2018most recent commit 4 years ago
Chunky Pipes ⭐ 5
Pipeline Design and Distribution Framework
total releases 5latest release July 19, 2017most recent commit 6 years ago
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