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The Top 23 Pipeline Nextflow Open Source Projects

Open source projects categorized as Pipeline Nextflow
Categories > Nextflow
Categories > Data Processing > Pipeline
Docker Benchmarks ⭐ 17
A benchmarks of genomic pipelines running in Docker containers
most recent commit 9 years ago
Treeval ⭐ 17
Pipelines for the production of Treeval data
most recent commit 3 months ago
Bactpipe ⭐ 17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
most recent commit 2 years ago
Piper Nf ⭐ 17
RNA mapping pipeline
most recent commit 6 years ago
Hgtseq ⭐ 17
A pipeline to investigate horizontal gene transfer from NGS data
most recent commit a year ago
Crg Course Nov16 ⭐ 17
Nextflow + Docker tutorial material
most recent commit 7 years ago
Quantms ⭐ 17
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
most recent commit 6 months ago
Genomenote ⭐ 16
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
most recent commit 4 months ago
Pumatac ⭐ 16
Pipeline for Universal Mapping of ATAC-seq
most recent commit 4 months ago
Micone ⭐ 15
The Microbial Co-occurrence Network Explorer
total releases 20most recent commit 7 months ago
Sc2 Illumina Pipeline ⭐ 14
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
most recent commit 3 years ago
Clipseq ⭐ 14
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
most recent commit a year ago
Isoseq ⭐ 14
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
most recent commit 9 months ago
Nf Anvio Pangenome ⭐ 14
Analyze a set of genomes with the anvi'o pangenome pipeline
most recent commit 6 months ago
Chip Nf ⭐ 13
An automated ChIP-seq pipeline using Nextfow
most recent commit 2 years ago
Gwas ⭐ 12
UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
most recent commit a year ago
Arete ⭐ 12
AMR/VF LGT focused bacterial genomics analysis workflow
most recent commit 3 months ago
Exllsm Circuit Reconstruction ⭐ 12
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
most recent commit 6 months ago
Genomeassembler ⭐ 12
most recent commit a year ago
Alppaca ⭐ 11
A tooL for Prokaryotic Phylogeny And Clustering Analysis
most recent commit 4 months ago
Metaboigniter ⭐ 11
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
most recent commit 4 months ago
Imcyto ⭐ 11
Image Mass Cytometry analysis pipeline
most recent commit 3 years ago
Genomeannotator ⭐ 11
Pipeline for the identification of (coding) gene structures in draft genomes.
most recent commit 8 months ago
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