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The Top 19 Ngs Nextflow Open Source Projects

Open source projects categorized as Ngs Nextflow
Categories > Nextflow
Categories > Science > Ngs
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Needlestack ⭐ 39
Multi-sample somatic variant caller
most recent commit 4 years ago
Iarc Nf ⭐ 35
List of IARC bioinformatics nextflow pipelines
most recent commit a year ago
Grape Nf ⭐ 35
An automated RNA-seq pipeline using Nextflow
most recent commit 10 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 3 months ago
Rnaseq Nf ⭐ 20
RNAseq analysis pipeline
most recent commit 2 years ago
Gatk4_best_practice ⭐ 18
GATK4 Best Practice Nextflow Pipeline
most recent commit 6 years ago
Alignment Nf ⭐ 18
Whole Exome/Whole Genome Sequencing alignment pipeline
most recent commit 3 years ago
Hgtseq ⭐ 17
A pipeline to investigate horizontal gene transfer from NGS data
most recent commit a year ago
Crisprseq ⭐ 17
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
most recent commit 3 months ago
Covigator Ngs Pipeline ⭐ 15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
most recent commit 5 months ago
Grandeur ⭐ 13
UPHL's Reference Free Pipeline
most recent commit 4 months ago
Chip Nf ⭐ 13
An automated ChIP-seq pipeline using Nextfow
most recent commit 2 years ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Monsda ⭐ 10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
total releases 14most recent commit 5 months ago
Nextflow_pipelines ⭐ 8
The set of NGS processing pipelines used at Babraham
most recent commit 3 months ago
Ngs580 Nf ⭐ 7
Target exome sequencing analysis for NYU NGS580 gene panel
most recent commit 4 years ago
Ipsa Nf ⭐ 5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
most recent commit 5 years ago
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