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The Top 19 Pipeline Neuroimaging Open Source Projects

Open source projects categorized as Pipeline Neuroimaging
Categories > Machine Learning > Neuroimaging
Categories > Data Processing > Pipeline
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64most recent commit 4 months agopypi smriprep} Downloads
Pyprep ⭐ 106
A Python implementation of the Preprocessing Pipeline (PREP) for EEG data
dependent packages 1total releases 11most recent commit 4 months agopypi pyprep} Downloads
Automaticanalysis ⭐ 70
Automatic Analysis (aa)
most recent commit 3 months ago
Halfpipe ⭐ 56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
most recent commit 3 months ago
Mindcontrol ⭐ 48
MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:
most recent commit 5 years ago
Fmriflows ⭐ 42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
most recent commit 2 years ago
Sepia ⭐ 41
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
most recent commit 5 months ago
Conpy ⭐ 33
Python package for power mapping and functional connectivity using DICS
most recent commit 7 months ago
Appian ⭐ 32
APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.
most recent commit a year ago
Niak ⭐ 24
GNU Octave library for connectivity analysis in large fMRI datasets
most recent commit 3 years ago
Prime Re.github.io ⭐ 16
Open resource exchange platform for non-human primate neuroimaging
most recent commit 4 months ago
Pipedream ⭐ 16
PipeDream - open source neuroimaging pipelines
most recent commit 5 years ago
Airflow Imaging Plugins ⭐ 14
Set of plugins helping to work with imaging data in Airflow.
total releases 43most recent commit 6 years ago
Clpipe ⭐ 11
Python pipeline for neuroimaging data
most recent commit 4 months ago
Pypes ⭐ 9
Reusable neuroimaging pipelines using nipype
most recent commit 5 years ago
Xnat Pipelines ⭐ 9
XNAT pipelines repository
most recent commit 2 years ago
Ironsmithqsm ⭐ 8
Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
most recent commit a year ago
Sim ⭐ 6
A set of helpers to build Apache Spark pipelines for Neuroimaging
total releases 5most recent commit 6 years ago
Rpipe ⭐ 5
Neuroimaging preprocessing pipeline, the ruby way
dependent packages 1total releases 10most recent commit 11 years agorubygems rpipe} Downloads
The 3 Most Depended On Pipeline Neuroimaging Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Rpipe ⭐ 5
Neuroimaging preprocessing pipeline, the ruby way
dependent packages 1total releases 10latest release February 01, 2012most recent commit 11 years agorubygems rpipe} Downloads
Pyprep ⭐ 106
A Python implementation of the Preprocessing Pipeline (PREP) for EEG data
dependent packages 1total releases 11latest release October 27, 2023most recent commit 4 months agopypi pyprep} Downloads
The 5 Latest Releases In Pipeline Neuroimaging Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Pyprep ⭐ 106
A Python implementation of the Preprocessing Pipeline (PREP) for EEG data
dependent packages 1total releases 11latest release October 27, 2023most recent commit 4 months agopypi pyprep} Downloads
Airflow Imaging Plugins ⭐ 14
Set of plugins helping to work with imaging data in Airflow.
total releases 43latest release November 21, 2017most recent commit 6 years ago
Sim ⭐ 6
A set of helpers to build Apache Spark pipelines for Neuroimaging
total releases 5latest release October 19, 2017most recent commit 6 years ago
Rpipe ⭐ 5
Neuroimaging preprocessing pipeline, the ruby way
dependent packages 1total releases 10latest release February 01, 2012most recent commit 11 years agorubygems rpipe} Downloads
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