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The Top 23 Python Neuroimaging Mri Open Source Projects

Open source projects categorized as Python Neuroimaging Mri
Categories > Mri
Categories > Machine Learning > Neuroimaging
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16most recent commit a year agopypi intensity-normalization} Downloads
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
most recent commit 4 years ago
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64most recent commit 4 months agopypi smriprep} Downloads
Bidscoin ⭐ 110
BIDScoin converts your source-level neuroimaging data to BIDS
total releases 32most recent commit 3 months ago
Enigma ⭐ 101
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
most recent commit 5 months ago
Bidskit ⭐ 57
Utility functions for working with DICOM and BIDS neuroimaging data
total releases 27most recent commit 3 months ago
Miracl ⭐ 29
Multi-modal Image Registration And Connectivity anaLysis
most recent commit 3 months ago
Tfce_mediation ⭐ 27
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
total releases 42most recent commit a year ago
Hippmapp3r ⭐ 27
AICONSlab's hippocampal segmentation algorithm using CNNs
most recent commit 9 months ago
Mrivis ⭐ 21
medical image visualization library and development toolkit
most recent commit a year ago
Sdc Bids Smri ⭐ 20
Structural Neuroimaging Analysis in Python
most recent commit 4 months ago
Sdc Bids Intromri ⭐ 19
Introduction to MRI and BIDS
most recent commit a year ago
Nigsp ⭐ 15
NiGSP: a module for graph signal processing on neuroimaging data
total releases 28most recent commit 4 months ago
Airflow Imaging Plugins ⭐ 14
Set of plugins helping to work with imaging data in Airflow.
total releases 43most recent commit 6 years ago
Skbold ⭐ 14
Utilities and tools for machine learning on BOLD-fMRI data
total releases 10most recent commit 3 years ago
Icvmapp3r ⭐ 12
AICONSlab's brain extraction (skull-stripping) algorithm using CNNs
most recent commit 2 years ago
Bids Tools ⭐ 11
Tools for dealing with neuroimaging data in the BIDS structure
most recent commit 5 years ago
Hypermapp3r ⭐ 11
AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs
most recent commit 2 years ago
Nichart ⭐ 10
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
most recent commit 3 months ago
Mrqa ⭐ 9
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
most recent commit 4 months ago
Brainload ⭐ 8
A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.
most recent commit 2 years ago
React Fmri ⭐ 8
REACT: Receptor-Enriched Analysis of functional Connectivity by Targets
total releases 10most recent commit 8 months ago
Z Brains ⭐ 8
z-brains: open software for epilepsy lesion lateralization and localization
most recent commit 3 months ago
The 3 Most Depended On Python Neuroimaging Mri Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16latest release March 15, 2022most recent commit a year agopypi intensity-normalization} Downloads
Django_mri ⭐ 6
A reusable Django app to manage MRI data.
dependent packages 1total releases 4latest release December 03, 2019most recent commit a year agopypi django-mri} Downloads
The 10 Latest Releases In Python Neuroimaging Mri Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Bidscoin ⭐ 110
BIDScoin converts your source-level neuroimaging data to BIDS
total releases 32latest release October 30, 2023most recent commit 3 months ago
Bidskit ⭐ 57
Utility functions for working with DICOM and BIDS neuroimaging data
total releases 27latest release September 07, 2023most recent commit 3 months ago
Nigsp ⭐ 15
NiGSP: a module for graph signal processing on neuroimaging data
total releases 28latest release August 16, 2023most recent commit 4 months ago
React Fmri ⭐ 8
REACT: Receptor-Enriched Analysis of functional Connectivity by Targets
total releases 10latest release July 20, 2022most recent commit 8 months ago
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16latest release March 15, 2022most recent commit a year agopypi intensity-normalization} Downloads
Django_mri ⭐ 6
A reusable Django app to manage MRI data.
dependent packages 1total releases 4latest release December 03, 2019most recent commit a year agopypi django-mri} Downloads
Tfce_mediation ⭐ 27
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
total releases 42latest release October 23, 2018most recent commit a year ago
Airflow Imaging Plugins ⭐ 14
Set of plugins helping to work with imaging data in Airflow.
total releases 43latest release November 21, 2017most recent commit 6 years ago
Skbold ⭐ 14
Utilities and tools for machine learning on BOLD-fMRI data
total releases 10latest release July 31, 2017most recent commit 3 years ago
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