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The Top 23 Mri Open Source Projects

Open source projects categorized as Mri
Categories > Mri
Fastmri ⭐ 1,197
A large-scale dataset of both raw MRI measurements and clinical MRI images.
total releases 5most recent commit 3 months ago
Dataset ⭐ 856
医学影像数据集列表 『An Index for Medical Imaging Datasets』
most recent commit 2 years ago
Ruru ⭐ 755
Native Ruby extensions written in Rust
total releases 22most recent commit 5 years ago
Dcm2niix ⭐ 746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dependent packages 2total releases 2most recent commit 3 months agopypi dcm2niix} Downloads
Setup Ruby ⭐ 724
An action to download a prebuilt Ruby and add it to the PATH in 5 seconds
most recent commit 3 months ago
Yjit ⭐ 570
Optimizing JIT compiler built inside CRuby
most recent commit 5 months ago
Freesurfer ⭐ 509
Neuroimaging analysis and visualization suite
most recent commit 3 months ago
Regexp Examples ⭐ 483
Generate strings that match a given regular expression
dependent packages 17total releases 42most recent commit 3 years agorubygems regexp-examples} Downloads
Sigpy ⭐ 276
Python package for signal processing, with emphasis on iterative methods
dependent packages 6total releases 35most recent commit 4 months agopypi sigpy} Downloads
Mriqc ⭐ 275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
dependent packages 1total releases 104most recent commit 11 days agopypi mriqc} Downloads
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16most recent commit a year agopypi intensity-normalization} Downloads
Bart ⭐ 269
BART: Toolbox for Computational Magnetic Resonance Imaging
most recent commit 3 months ago
Vt Unet ⭐ 210
[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation
most recent commit 7 months ago
Brainchop ⭐ 208
Brainchop: In-browser 3D MRI rendering and segmentation
most recent commit 4 months ago
Spinalcordtoolbox ⭐ 184
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
most recent commit 10 days ago
Cnn 3d Images Tensorflow ⭐ 176
3D image classification using CNN (Convolutional Neural Network)
most recent commit 4 years ago
Deepinv ⭐ 165
PyTorch library for solving imaging inverse problems using deep learning
most recent commit 3 months ago
Workbench ⭐ 163
Connectome Workbench
most recent commit 3 months ago
Deep Mri Reconstruction ⭐ 159
Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo
most recent commit 5 years ago
Qmrlab ⭐ 138
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
most recent commit 4 months ago
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
most recent commit 4 years ago
Torchkbnufft ⭐ 133
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
dependent packages 1total releases 18most recent commit a year agopypi torchkbnufft} Downloads
Unsupervised_anomaly_detection_brain_mri ⭐ 123
Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
most recent commit 2 years ago
The 10 Most Depended On Mri Open Source Projects
Regexp Examples ⭐ 483
Generate strings that match a given regular expression
dependent packages 17total releases 42latest release January 09, 2020most recent commit 3 years agorubygems regexp-examples} Downloads
Phantominator ⭐ 6
Generate numerical phantoms.
dependent packages 7total releases 28latest release April 26, 2020most recent commit 3 years agopypi phantominator} Downloads
Sigpy ⭐ 276
Python package for signal processing, with emphasis on iterative methods
dependent packages 6total releases 35latest release October 16, 2023most recent commit 4 months agopypi sigpy} Downloads
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Pypulseq ⭐ 98
Pulseq in Python
dependent packages 4total releases 12latest release May 03, 2021most recent commit 3 months agopypi pypulseq} Downloads
Hermann ⭐ 62
A gem providing cross-platform Kafka producer and consumer support
dependent packages 3total releases 37latest release February 29, 2016most recent commit 5 years agorubygems hermann} Downloads
Dosma ⭐ 46
An AI-powered open-source medical image analysis toolbox
dependent packages 3total releases 9latest release April 18, 2022most recent commit a year agopypi dosma} Downloads
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 2total releases 11latest release September 29, 2020most recent commit 3 years ago
Ssfp ⭐ 6
SSFP simulation and algorithms.
dependent packages 2total releases 11latest release October 25, 2023most recent commit 5 months agopypi ssfp} Downloads
Brainsprite ⭐ 21
Brainsprite turns a sprite of brain slices into a 3D interactive web viewer
dependent packages 2total releases 8latest release April 30, 2020most recent commit 4 years agonpm brainsprite.js} Downloads
The 10 Latest Releases In Mri Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Fmri Physio Log ⭐ 7
Parse Siemens PMU files
total releases 9latest release November 18, 2023most recent commit 3 months ago
Brats Toolkit ⭐ 53
Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
total releases 12latest release November 09, 2023most recent commit 4 months ago
Bidscoin ⭐ 110
BIDScoin converts your source-level neuroimaging data to BIDS
total releases 32latest release October 30, 2023most recent commit 3 months ago
Ssfp ⭐ 6
SSFP simulation and algorithms.
dependent packages 2total releases 11latest release October 25, 2023most recent commit 5 months agopypi ssfp} Downloads
Sigpy ⭐ 276
Python package for signal processing, with emphasis on iterative methods
dependent packages 6total releases 35latest release October 16, 2023most recent commit 4 months agopypi sigpy} Downloads
Bidskit ⭐ 57
Utility functions for working with DICOM and BIDS neuroimaging data
total releases 27latest release September 07, 2023most recent commit 3 months ago
Pygrappa ⭐ 51
Python implementations of GRAPPA-like algorithms.
total releases 56latest release September 05, 2023most recent commit 7 months ago
Nigsp ⭐ 15
NiGSP: a module for graph signal processing on neuroimaging data
total releases 28latest release August 16, 2023most recent commit 4 months ago
Erwin ⭐ 10
Quantitative MRI toolbox in Python
total releases 7latest release August 09, 2023most recent commit 8 months ago
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