Awesome Open Source
Awesome Open Source
Combined Topics
metagenomics x
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The Top 22 Metagenomics Open Source Projects

Topic > Metagenomics
Vsearch ⭐ 434
Versatile open-source tool for microbiome analysis
Mmseqs2 ⭐ 423
MMseqs2: ultra fast and sensitive search and clustering suite
Megahit ⭐ 314
Ultra-fast and memory-efficient (meta-)genome assembler
Dada2 ⭐ 270
Accurate sample inference from amplicon data with single nucleotide resolution
Anvio ⭐ 259
An analysis and visualization platform for 'omics data
Training Material ⭐ 181
A collection of Galaxy-related training material
Atlas ⭐ 174
ATLAS - Three commands to start analysing your metagenome data
Biomartr ⭐ 142
Genomic Data Retrieval with R
Kaiju ⭐ 141
Fast taxonomic classification of metagenomic sequencing reads using a protein reference database
Dashing ⭐ 130
Fast and accurate genomic distances using HyperLogLog
Krakenuniq ⭐ 123
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Squeezemeta ⭐ 118
A complete pipeline for metagenomic analysis
Ngless ⭐ 112
NGLess: NGS with less work
Decontam ⭐ 83
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Plass ⭐ 73
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Camisim ⭐ 61
CAMISIM: Simulating metagenomes and microbial communities
Lambda ⭐ 59
LAMBDA – the Local Aligner for Massive Biological DatA
Groot ⭐ 48
A resistome profiler for Graphing Resistance Out Of meTagenomes
Dram ⭐ 41
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Nonpareil ⭐ 26
Estimate metagenomic coverage and sequence diversity
Metacache ⭐ 26
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Reads For Assembly ⭐ 17
Simulate metagenomic short reads from one or more populations.
1-22 of 22 projects
Advertising 📦 10
All Projects
Application Programming Interfaces 📦 124
Applications 📦 192
Artificial Intelligence 📦 78
Blockchain 📦 73
Build Tools 📦 113
Cloud Computing 📦 80
Code Quality 📦 28
Collaboration 📦 32
Command Line Interface 📦 49
Community 📦 83
Companies 📦 60
Compilers 📦 63
Computer Science 📦 80
Configuration Management 📦 42
Content Management 📦 175
Control Flow 📦 213
Data Formats 📦 78
Data Processing 📦 276
Data Storage 📦 135
Economics 📦 64
Frameworks 📦 215
Games 📦 129
Graphics 📦 110
Hardware 📦 152
Integrated Development Environments 📦 49
Learning Resources 📦 166
Legal 📦 29
Libraries 📦 129
Lists Of Projects 📦 22
Machine Learning 📦 347
Mapping 📦 64
Marketing 📦 15
Mathematics 📦 55
Media 📦 239
Messaging 📦 98
Networking 📦 315
Operating Systems 📦 89
Operations 📦 121
Package Managers 📦 55
Programming Languages 📦 245
Runtime Environments 📦 100
Science 📦 42
Security 📦 396
Social Media 📦 27
Software Architecture 📦 72
Software Development 📦 72
Software Performance 📦 58
Software Quality 📦 133
Text Editors 📦 49
Text Processing 📦 136
User Interface 📦 330
User Interface Components 📦 514
Version Control 📦 30
Virtualization 📦 71
Web Browsers 📦 42
Web Servers 📦 26
Web User Interface 📦 210