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The Top 23 Python Segmentation Medical Imaging Open Source Projects

Open source projects categorized as Python Segmentation Medical Imaging
Categories > Science > Medical Imaging
Categories > Machine Learning > Segmentation
Slicer ⭐ 1,339
Multi-platform, free open source software for visualization and image computing.
most recent commit 3 months ago
Itk ⭐ 1,306
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
dependent packages 5total releases 4most recent commit 3 months ago
Medicaldetectiontoolkit ⭐ 1,249
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
most recent commit 3 months ago
Niftynet ⭐ 1,170
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
most recent commit 4 years ago
Medicalzoopytorch ⭐ 896
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
most recent commit 2 years ago
Slicergitsvnarchive ⭐ 883
Multi-platform, free open source software for visualization and image computing.
most recent commit 4 years ago
Medsegdiff ⭐ 831
Medical Image Segmentation with Diffusion Model
most recent commit 3 months ago
Dipy ⭐ 647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
most recent commit 3 months ago
All About The Gan ⭐ 602
All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN
most recent commit 6 years ago
Lungmask ⭐ 576
Automated lung segmentation in CT
dependent packages 1total releases 7most recent commit 3 months agopypi lungmask} Downloads
Innereye Deeplearning ⭐ 509
Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning
most recent commit 9 months ago
Monailabel ⭐ 496
MONAI Label is an intelligent open source image labeling and learning tool.
total releases 114most recent commit 3 months ago
Medical Transformer ⭐ 484
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
most recent commit 2 years ago
Robot Surgery Segmentation ⭐ 475
Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
most recent commit 5 years ago
Unext Pytorch ⭐ 359
Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
most recent commit 7 months ago
U Net Brain Tumor ⭐ 351
U-Net Brain Tumor Segmentation
most recent commit 5 years ago
Miscnn ⭐ 338
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
total releases 60most recent commit a year ago
Pyimsegm ⭐ 289
Image segmentation - general superpixel segmentation & center detection & region growing
most recent commit 2 years ago
Kiu Net Pytorch ⭐ 245
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
most recent commit 2 years ago
2020 Cbms Doubleu Net ⭐ 207
DoubleU-Net for Semantic Image Segmentation in TensorFlow & Pytorch (Nominated for Best Paper Award (IEEE CBMS))
most recent commit 6 months ago
Open Solution Data Science Bowl 2018 ⭐ 158
Open solution to the Data Science Bowl 2018
most recent commit 2 years ago
Cbim Medical Image Segmentation ⭐ 148
A PyTorch framework for medical image segmentation
most recent commit 10 months ago
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
most recent commit 4 years ago
The 5 Most Depended On Python Segmentation Medical Imaging Open Source Projects
Pydicom Seg ⭐ 54
Python package for DICOM-SEG medical segmentation file reading and writing
dependent packages 7total releases 8latest release December 21, 2021most recent commit a year agopypi pydicom-seg} Downloads
Platipy ⭐ 80
Processing Library and Analysis Toolkit for Medical Imaging in Python
dependent packages 3total releases 20latest release October 19, 2023most recent commit 4 months agopypi platipy} Downloads
Lungmask ⭐ 576
Automated lung segmentation in CT
dependent packages 1total releases 7latest release November 01, 2023most recent commit 3 months agopypi lungmask} Downloads
Delia ⭐ 12
DICOM Extraction for Large-scale Image Analysis (DELIA).
dependent packages 1total releases 32latest release August 03, 2023most recent commit 4 months agopypi delia} Downloads
The 10 Latest Releases In Python Segmentation Medical Imaging Open Source Projects
Segmentation_metrics ⭐ 58
A package to compute medical segmentation metrics.
total releases 32latest release November 18, 2023most recent commit 5 months ago
Biom3d ⭐ 15
Easy Volumetric Segmentation with Deep Learning
total releases 34latest release November 13, 2023most recent commit 4 months ago
Brats Toolkit ⭐ 53
Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
total releases 12latest release November 09, 2023most recent commit 4 months ago
Lungmask ⭐ 576
Automated lung segmentation in CT
dependent packages 1total releases 7latest release November 01, 2023most recent commit 3 months agopypi lungmask} Downloads
Platipy ⭐ 80
Processing Library and Analysis Toolkit for Medical Imaging in Python
dependent packages 3total releases 20latest release October 19, 2023most recent commit 4 months agopypi platipy} Downloads
Monailabel ⭐ 496
MONAI Label is an intelligent open source image labeling and learning tool.
total releases 114latest release October 01, 2023most recent commit 3 months ago
Delia ⭐ 12
DICOM Extraction for Large-scale Image Analysis (DELIA).
dependent packages 1total releases 32latest release August 03, 2023most recent commit 4 months agopypi delia} Downloads
Gandlf ⭐ 127
A generalizable application framework for segmentation, regression, and classification using PyTorch
total releases 8latest release September 20, 2022most recent commit 3 months ago
Miscnn ⭐ 338
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
total releases 60latest release February 11, 2022most recent commit a year ago
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