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The Top 5 Matrix Vcf Open Source Projects

Open source projects categorized as Matrix Vcf
Categories > Science > Vcf
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 10 months ago
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 5 months agopypi SigProfilerExtractor} Downloads
Local_pca ⭐ 59
Methods for examining PCA locally along the genome.
most recent commit 10 months ago
Helmsman ⭐ 19
highly-efficient & lightweight mutation signature matrix aggregation
most recent commit 3 years ago
Multivariantviewer ⭐ 6
A JBrowse plugin with a custom variant track for multi-VCF files and optionally plotting LD scores
most recent commit 5 years ago
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