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The Top 23 R Gwas Open Source Projects

Open source projects categorized as R Gwas
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6most recent commit 8 months ago
Gwas_scripts ⭐ 127
Codebook from my GWAS cookbook
most recent commit 2 years ago
Mungesumstats ⭐ 59
Rapid standardisation and quality control of GWAS or QTL summary statistics
most recent commit 3 months ago
Magma_celltyping ⭐ 50
Find causal cell-types underlying complex trait genetics
most recent commit 8 months ago
Locuscomparer ⭐ 42
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
most recent commit a year ago
Lme4qtl ⭐ 33
Mixed models @lme4 + custom covariances + parameter constraints
most recent commit 3 years ago
Bgwas ⭐ 33
R package to perform Bayesian Genome-Wide Association Studies
most recent commit 6 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7most recent commit 7 months ago
Qtcat ⭐ 25
Quantitative Trait Cluster Association Test in R
most recent commit 3 years ago
Hierfstat ⭐ 22
the hierfstat package
most recent commit a year ago
Gwas Pipeline ⭐ 20
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
most recent commit 2 years ago
Echolocator ⭐ 20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
most recent commit a year ago
Gchromvar ⭐ 18
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
most recent commit 4 years ago
Rtassel ⭐ 17
R front-end for TASSEL
most recent commit 6 months ago
Adjclust ⭐ 16
Adjacency-constrained hierarchical clustering of a similarity matrix
most recent commit 3 months ago
Gglocuszoom ⭐ 15
Create LocusZoom-style plots in R.
most recent commit a year ago
Farmcpupp ⭐ 14
Perform GWAS using the FarmCPU model.
most recent commit 2 years ago
Containers ⭐ 13
CoMorMent-Containers
most recent commit 4 months ago
Gwastools ⭐ 13
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
most recent commit 2 years ago
Cataloguer ⭐ 12
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
most recent commit a year ago
Npdr ⭐ 12
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
most recent commit 10 months ago
Introduction_to_gwas ⭐ 11
https://filippob.github.io/introduction_to_gwas/
most recent commit 4 months ago
The 2 Most Depended On R Gwas Open Source Projects
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
The 6 Latest Releases In R Gwas Open Source Projects
Mvmapit ⭐ 8
The multivariate MArginal ePIstasis Test
total releases 4latest release September 26, 2023most recent commit 6 months ago
Pcsstools ⭐ 5
Tools for regression using pre-computed summary statistics
total releases 2latest release September 06, 2023most recent commit 8 months ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
Quincunx ⭐ 8
quincunx: an R package to query, download and wrangle PGS Catalog data
total releases 4latest release August 14, 2022most recent commit 2 years ago
Statgengwas ⭐ 8
See https://biometris.github.io/statgenGWAS for a full description
total releases 7latest release July 29, 2021most recent commit a year ago
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