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The Top 23 Genomics Transcriptomics Open Source Projects

Open source projects categorized as Genomics Transcriptomics
Categories > Science > Genomics
Categories > Transcriptomics
Pathomicfusion ⭐ 148
Fusing Histology and Genomics via Deep Learning - IEEE TMI
most recent commit 2 years ago
Cell Ontology ⭐ 126
An ontology of cell types
most recent commit 3 months ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20most recent commit 5 months ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Awesome Biological Visualizations ⭐ 41
A list of web-based interactive biological data visualizations.
most recent commit 3 years ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Teaching ⭐ 25
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
most recent commit 3 months ago
Chromoformer ⭐ 24
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
total releases 4most recent commit 8 months ago
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70most recent commit 3 months agopypi nmdc-schema} Downloads
Fishpond ⭐ 23
Differential expression and allelic analysis, nonparametric statistics
most recent commit 8 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Enrich_omics ⭐ 15
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
most recent commit 4 months ago
Omicssuite.github.io ⭐ 15
OmicsSuite website for releasing new version.
most recent commit 3 months ago
Omics ⭐ 14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
most recent commit 4 months ago
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9most recent commit 5 months ago
Bacnet ⭐ 12
BACNET is a Java based platform to develop website for multi-omics analysis
most recent commit a year ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Biomm ⭐ 9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
most recent commit a year ago
Personalized_regression ⭐ 8
Personalized Regression
most recent commit 4 years ago
Rna Seq ⭐ 8
bioinformatics pipelines
most recent commit a year ago
Tidyomics ⭐ 8
Easily install and load packages from the tidyomcis ecosystem
most recent commit 3 months ago
Ngs17 ⭐ 8
Materials used during #NGSchool2017
most recent commit 7 years ago
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7most recent commit 4 months ago
The 5 Latest Releases In Genomics Transcriptomics Open Source Projects
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7latest release November 22, 2023most recent commit 4 months ago
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9latest release September 19, 2023most recent commit 5 months ago
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70latest release June 16, 2022most recent commit 3 months agopypi nmdc-schema} Downloads
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20latest release October 08, 2021most recent commit 5 months ago
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