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The Top 23 Genomics Rna Seq Open Source Projects

Open source projects categorized as Genomics Rna Seq
Categories > Science > Genomics
Categories > Rna Seq
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 16 days ago
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20most recent commit 5 months ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Omicsplayground ⭐ 112
Visual self-service analytics platform for big omics data.
most recent commit 3 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Rnaseq Nf ⭐ 59
A proof of concept of RNAseq pipeline
most recent commit 6 months ago
Rattle ⭐ 51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
most recent commit 4 months ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Genome Annotation Pipeline ⭐ 36
Genome annotation pipeline
most recent commit 4 months ago
Circrna ⭐ 32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
most recent commit 3 months ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29most recent commit a year ago
Wiggleplotr ⭐ 28
A small R package to make sequencing read coverage plots in R.
most recent commit 2 years ago
Deepstats ⭐ 27
deepStats: a stastitical toolbox for deeptools and genomic signals
most recent commit 3 years ago
Smallrnaseq ⭐ 26
small rna-seq analysis package
total releases 6most recent commit a year ago
Teaching ⭐ 25
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
most recent commit 3 months ago
Vigen ⭐ 24
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
most recent commit a year ago
Fishpond ⭐ 23
Differential expression and allelic analysis, nonparametric statistics
most recent commit 8 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Dropclust ⭐ 15
Version 2.1.0 released
most recent commit 5 years ago
Pigx ⭐ 15
Pipelines in genomics
most recent commit 2 years ago
Atacr ⭐ 12
Analysing Capture Seq Count Data
most recent commit 6 years ago
Xpresspipe ⭐ 11
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
most recent commit 10 months ago
The 3 Latest Releases In Genomics Rna Seq Open Source Projects
Xpore ⭐ 122
Identification of differential RNA modifications from nanopore direct RNA sequencing
total releases 20latest release October 08, 2021most recent commit 5 months ago
Smallrnaseq ⭐ 26
small rna-seq analysis package
total releases 6latest release October 23, 2020most recent commit a year ago
Pygtftk ⭐ 30
A python package and a set of shell commands to handle GTF files
total releases 29latest release September 21, 2018most recent commit a year ago
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