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The Top 23 R Genomics Open Source Projects

Open source projects categorized as R Genomics
Seurat ⭐ 2,025
R toolkit for single cell genomics
dependent packages 2total releases 16most recent commit 3 months ago
Adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 17total releases 14most recent commit 3 months ago
Gggenomes ⭐ 518
A grammar of graphics for comparative genomics
most recent commit 3 months ago
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
most recent commit 3 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43most recent commit 3 months ago
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16most recent commit 5 months ago
Smudgeplot ⭐ 200
Inference of ploidy and heterozygosity structure using whole genome sequencing data
most recent commit 3 months ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21most recent commit 5 months ago
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Gsva ⭐ 151
Gene set variation analysis
most recent commit 4 months ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6most recent commit 8 months ago
Mixomics ⭐ 126
Development repository for the Bioconductor package 'mixOmics '
most recent commit 6 months ago
Omicsplayground ⭐ 112
Visual self-service analytics platform for big omics data.
most recent commit 3 months ago
Mgatk ⭐ 89
mgatk: mitochondrial genome analysis toolkit
total releases 20most recent commit 3 months ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 3 months ago
Geoquery ⭐ 73
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
most recent commit 10 months ago
Ggnomics ⭐ 69
A small project to add ggplot2 extensions
most recent commit 4 years ago
Orthologr ⭐ 68
Genome wide orthology inference and dNdS estimation
most recent commit 7 months ago
Multiassayexperiment ⭐ 67
Bioconductor package for management of multi-assay data
most recent commit 3 months ago
Titancna ⭐ 59
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
most recent commit 3 years ago
Mungesumstats ⭐ 59
Rapid standardisation and quality control of GWAS or QTL summary statistics
most recent commit 3 months ago
The 10 Most Depended On R Genomics Open Source Projects
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Msigdbr ⭐ 52
MSigDB gene sets for multiple organisms in a tidy data format
dependent packages 11total releases 7latest release March 30, 2022most recent commit 2 years ago
Bedmatrix ⭐ 10
A matrix-like wrapper around PLINK .bed files
dependent packages 9total releases 12latest release July 08, 2020most recent commit 4 years ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Alphasimr ⭐ 36
R package for breeding program simulations
dependent packages 3total releases 22latest release December 01, 2023most recent commit 3 months ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 5 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
The 10 Latest Releases In R Genomics Open Source Projects
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 5 months ago
Alphasimr ⭐ 36
R package for breeding program simulations
dependent packages 3total releases 22latest release December 01, 2023most recent commit 3 months ago
Macrosyntr ⭐ 11
R package for comparison of synteny conservation at the genome-wide scale.
total releases 3latest release November 14, 2023most recent commit 5 months ago
Canvasxpress ⭐ 282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
dependent packages 4total releases 43latest release November 08, 2023most recent commit 3 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Driver ⭐ 14
Prioritizing Cancer Driver Genes Using Genomics Data
total releases 6latest release August 19, 2023most recent commit 8 months ago
Jbrowser ⭐ 31
R interface to the JBrowse 2 Linear Genome View.
dependent packages 1total releases 7latest release June 08, 2023most recent commit 4 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
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