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The Top 21 Python Genomics Vcf Open Source Projects

Open source projects categorized as Python Genomics Vcf
Categories > Science > Genomics
Categories > Science > Vcf
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73most recent commit 9 months agopypi kipoi} Downloads
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4most recent commit 4 years agopypi svtyper} Downloads
Scoary ⭐ 71
Pan-genome wide association studies
total releases 16most recent commit 7 years ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Cerebra ⭐ 26
A tool for fast and accurate summarizing of variant calling format (VCF) files
total releases 15most recent commit 4 years ago
Varsome Api Client Python ⭐ 26
Example client programs for Saphetor's VarSome annotation API
most recent commit 6 months ago
Samovar ⭐ 22
Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
most recent commit 5 years ago
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14most recent commit 2 years ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Vcf2fhir ⭐ 20
vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
total releases 9most recent commit 2 years ago
Mitty ⭐ 13
Seven Bridges Genomics aligner/caller debugging and analysis tools
total releases 4most recent commit 5 years ago
Misc Genomics Tools ⭐ 13
assorted scripts for doing genomics
most recent commit 8 years ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit a year ago
Rsidx ⭐ 12
Library for indexing VCF files for random access searches by rsID
most recent commit 8 months ago
Ucscbeacon ⭐ 10
A GA4GH Draft Beacon implementation
most recent commit 9 years ago
Agaat ⭐ 7
Automated Tool for Global Screening Array analysis
most recent commit 6 months ago
Genotype ⭐ 7
Simple genotype comparison of VCF files
dependent packages 1total releases 9most recent commit a year agopypi genotype} Downloads
Broad Fungalgroup ⭐ 6
Broad Fungal Genomics group scripts
most recent commit 4 months ago
The 4 Most Depended On Python Genomics Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73latest release June 14, 2022most recent commit 9 months agopypi kipoi} Downloads
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4latest release September 04, 2019most recent commit 4 years agopypi svtyper} Downloads
Genotype ⭐ 7
Simple genotype comparison of VCF files
dependent packages 1total releases 9latest release September 23, 2020most recent commit a year agopypi genotype} Downloads
The 10 Latest Releases In Python Genomics Vcf Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Cmdbtools ⭐ 21
Command line tools for CMDB varaints browser
total releases 14latest release July 06, 2022most recent commit 2 years ago
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73latest release June 14, 2022most recent commit 9 months agopypi kipoi} Downloads
Vcf2fhir ⭐ 20
vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
total releases 9latest release May 26, 2022most recent commit 2 years ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Genotype ⭐ 7
Simple genotype comparison of VCF files
dependent packages 1total releases 9latest release September 23, 2020most recent commit a year agopypi genotype} Downloads
Cerebra ⭐ 26
A tool for fast and accurate summarizing of variant calling format (VCF) files
total releases 15latest release September 16, 2020most recent commit 4 years ago
Svtyper ⭐ 78
Bayesian genotyper for structural variants
dependent packages 1total releases 4latest release September 04, 2019most recent commit 4 years agopypi svtyper} Downloads
Mitty ⭐ 13
Seven Bridges Genomics aligner/caller debugging and analysis tools
total releases 4latest release November 08, 2018most recent commit 5 years ago
Scoary ⭐ 71
Pan-genome wide association studies
total releases 16latest release October 04, 2017most recent commit 7 years ago
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