Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Pipeline Genomics Open Source Projects

Open source projects categorized as Pipeline Genomics
Categories > Science > Genomics
Categories > Data Processing > Pipeline
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Bedops ⭐ 244
🔬 BEDOPS: high-performance genomic feature operations
total releases 1most recent commit 2 years ago
Flowcraft ⭐ 234
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
total releases 18most recent commit 4 years ago
Aws Batch Genomics ⭐ 181
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
most recent commit 4 years ago
Gatk Sv ⭐ 148
A structural variation pipeline for short-read sequencing
most recent commit 3 months ago
Cloud Pipeline ⭐ 137
Cloud agnostic genomics analysis, scientific computation and storage platform
most recent commit 3 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Redundans ⭐ 121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
most recent commit 4 months ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Dolphinnext ⭐ 92
A graphical user interface for distributed data processing of high throughput genomics
most recent commit a year ago
Fermikit ⭐ 91
De novo assembly based variant calling pipeline for Illumina short reads
most recent commit 3 years ago
Hgtector ⭐ 87
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
most recent commit 7 months ago
Callings Nf ⭐ 76
GATK RNA-Seq Variant Calling in Nextflow
most recent commit 3 years ago
Rnaseq Nf ⭐ 59
A proof of concept of RNAseq pipeline
most recent commit 5 months ago
Pipelines Api Examples ⭐ 46
Examples for the Google Genomics Pipelines API.
most recent commit 6 years ago
Bio Pipeline ⭐ 45
My collection of light bioinformatics analysis pipelines for specific tasks
most recent commit 4 years ago
Bactmap ⭐ 45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
most recent commit 7 months ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8most recent commit 3 years ago
Get_phylomarkers ⭐ 39
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
most recent commit a year ago
The 2 Most Depended On Pipeline Genomics Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Dataflow Java ⭐ 35
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
dependent packages 1total releases 26latest release October 23, 2017most recent commit 5 years ago
The 9 Latest Releases In Pipeline Genomics Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8latest release May 24, 2021most recent commit 3 years ago
Bedops ⭐ 244
:microscope: BEDOPS: high-performance genomic feature operations
total releases 1latest release March 03, 2021most recent commit 2 years ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13latest release February 11, 2021most recent commit 3 years ago
Dataflow Java ⭐ 35
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.
dependent packages 1total releases 26latest release October 23, 2017most recent commit 5 years ago
Toil Scripts ⭐ 30
Toil workflows for common genomic pipelines
total releases 173latest release December 02, 2016most recent commit 5 years ago
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.