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The Top 20 Genomics Sequencing Ngs Open Source Projects

Open source projects categorized as Genomics Sequencing Ngs
Categories > Science > Genomics
Categories > Science > Ngs
Categories > Science > Sequencing
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Seqfu2 ⭐ 96
🚀 seqfu - Sequece Fastx Utilities
most recent commit 4 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Bio Dockers ⭐ 32
🐳 Bio-dockers: dockerized bioinformatic tools
most recent commit 3 months ago
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Sequenceng ⭐ 18
An interactive learning resource for next-generation sequencing (NGS) techniques
most recent commit 6 years ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1most recent commit 2 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3most recent commit 9 months ago
Prophage_tracer ⭐ 13
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
most recent commit a year ago
Deepvariant On Spark ⭐ 11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
most recent commit 2 years ago
Banzai Microbialgenomics Pipeline ⭐ 10
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
total releases 5most recent commit 7 years ago
Ngsderive ⭐ 10
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
total releases 24most recent commit 6 months ago
Appliedgenomeresearch ⭐ 6
course about NGS data processing: genomics and transcriptomics
most recent commit 3 years ago
Fings ⭐ 6
Filters for Next Generation Sequencing
most recent commit 2 years ago
Gbsapp ⭐ 5
Automated Pipeline for Variant/Haplotype Calling and Filtering
most recent commit 4 months ago
The 3 Most Depended On Genomics Sequencing Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
The 8 Latest Releases In Genomics Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Ctdnatools ⭐ 17
R package to work with ctDNA sequencing data
total releases 1latest release March 04, 2020most recent commit 2 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3latest release November 21, 2017most recent commit 9 months ago
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