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The Top 23 Genomics Metagenomics Open Source Projects

Open source projects categorized as Genomics Metagenomics
Categories > Science > Genomics
Categories > Metagenomics
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Dram ⭐ 214
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
total releases 28most recent commit 3 months ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21most recent commit 5 months ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5most recent commit a year ago
Computationalgenomicsmanual ⭐ 135
Robs manual for the computational genomics and bioinformatics class.
most recent commit 8 months ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Phables ⭐ 56
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
total releases 17most recent commit 3 months ago
Macrel ⭐ 48
Predict AMPs in (meta)genomes and peptides
most recent commit 4 months ago
Gecco ⭐ 45
GEne Cluster prediction with COnditional random fields.
total releases 29most recent commit 5 months ago
Wochenende ⭐ 30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
most recent commit 2 years ago
Zol ⭐ 28
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
total releases 2most recent commit 3 months ago
Bio Py ⭐ 27
Some useful python scripts for biologists
most recent commit 4 months ago
Metabcc Lr ⭐ 16
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
most recent commit 2 years ago
Mdmcleaner ⭐ 13
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
total releases 5most recent commit a year ago
Pynteny ⭐ 13
Query sequence database by HMMs arranged in predefined synteny structure
total releases 1most recent commit 6 months ago
Genome On Diet ⭐ 11
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
most recent commit 7 months ago
Sequence Database Curator ⭐ 10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
most recent commit 5 years ago
Bioinformatics Toolbox ⭐ 10
Docker container for bioinformatics tools and pipelines
most recent commit 3 months ago
Bioinformatics ⭐ 10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
most recent commit 6 months ago
Superpang ⭐ 9
Non-redundant pangenome assemblies from multiple genomes or bins
most recent commit 6 months ago
Environmental_metagenomics ⭐ 6
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
most recent commit a year ago
The 8 Latest Releases In Genomics Metagenomics Open Source Projects
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 5 months ago
Gecco ⭐ 45
GEne Cluster prediction with COnditional random fields.
total releases 29latest release November 23, 2023most recent commit 5 months ago
Phables ⭐ 56
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
total releases 17latest release October 09, 2023most recent commit 3 months ago
Pynteny ⭐ 13
Query sequence database by HMMs arranged in predefined synteny structure
total releases 1latest release October 13, 2022most recent commit 6 months ago
Ngless ⭐ 141
NGLess: NGS with less work
total releases 5latest release September 19, 2022most recent commit a year ago
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