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The Top 23 Jupyter Notebook Genomics Open Source Projects

Open source projects categorized as Jupyter Notebook Genomics
Categories > Science > Genomics
Categories > Data Processing > Jupyter Notebook
Dna Diffusion ⭐ 297
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
total releases 1most recent commit 3 months ago
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Dragonn ⭐ 245
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
most recent commit 2 years ago
Comp Genomics Class ⭐ 236
Code and examples for JHU Computational Genomics class
most recent commit 3 years ago
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73most recent commit 9 months agopypi kipoi} Downloads
Janggu ⭐ 205
Deep learning infrastructure for genomics
total releases 19most recent commit 3 years ago
Gcp For Bioinformatics ⭐ 178
GCP for Bioinformatics Researchers
most recent commit 3 months ago
Pathomicfusion ⭐ 148
Fusing Histology and Genomics via Deep Learning - IEEE TMI
most recent commit 2 years ago
Deep Learning Genomics Primer ⭐ 137
Contains files for the deep learning in genomics primer.
most recent commit 5 years ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Peddy ⭐ 104
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
most recent commit 3 years ago
Bpnet ⭐ 94
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
total releases 23most recent commit 2 years ago
Paga ⭐ 88
Mapping out the coarse-grained connectivity structures of complex manifolds.
most recent commit 5 years ago
Genomicsnotebook ⭐ 84
Jupyter Notebooks on Azure for Genomics Data Analysis
most recent commit 6 months ago
Porpoise ⭐ 83
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
most recent commit a year ago
Vrs ⭐ 73
Extensible specification for representing and uniquely identifying biological sequence variation
most recent commit 3 months ago
Chemcpa ⭐ 71
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
most recent commit 6 months ago
Ipyrad ⭐ 64
Interactive assembly and analysis of RAD-seq data sets
total releases 5most recent commit 3 months ago
Genomics In The Cloud ⭐ 63
Source code and related materials for the O'Reilly book
most recent commit 2 years ago
Hulk ⭐ 57
Histosketching Using Little Kmers
total releases 1most recent commit a year ago
Hla ⭐ 57
xHLA: Fast and accurate HLA typing from short read sequence data
most recent commit 6 years ago
Bigbio ⭐ 54
most recent commit 7 years ago
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8most recent commit 5 months ago
The 5 Most Depended On Jupyter Notebook Genomics Open Source Projects
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73latest release June 14, 2022most recent commit 9 months agopypi kipoi} Downloads
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Concise ⭐ 24
Concise: Keras extension for regulatory genomics
dependent packages 5total releases 25latest release April 15, 2020most recent commit 4 years agopypi concise} Downloads
Secimtools ⭐ 10
A set of metabolomics tools for use in Galaxy
dependent packages 1total releases 12latest release March 24, 2022most recent commit 2 years agopypi secimtools} Downloads
The 10 Latest Releases In Jupyter Notebook Genomics Open Source Projects
Vrs Python ⭐ 44
GA4GH Variation Representation Python Implementation
dependent packages 7total releases 48latest release November 09, 2023most recent commit 3 months agopypi ga4gh.vrs} Downloads
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Hulk ⭐ 57
Histosketching Using Little Kmers
total releases 1latest release May 25, 2023most recent commit a year ago
Biser ⭐ 14
A fast tool for detecting and decomposing segmental duplications in genome assemblies
total releases 8latest release September 27, 2022most recent commit a year ago
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8latest release August 10, 2022most recent commit 5 months ago
Kipoi ⭐ 222
Kipoi's model zoo API
dependent packages 7total releases 73latest release June 14, 2022most recent commit 9 months agopypi kipoi} Downloads
Secimtools ⭐ 10
A set of metabolomics tools for use in Galaxy
dependent packages 1total releases 12latest release March 24, 2022most recent commit 2 years agopypi secimtools} Downloads
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