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The Top 16 Genome Variant Calling Open Source Projects

Open source projects categorized as Genome Variant Calling
Categories > Science > Genome
Categories > Variant Calling
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8most recent commit 6 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Ilus ⭐ 89
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
total releases 13most recent commit 4 months ago
Mccortex ⭐ 86
De novo genome assembly and multisample variant calling
most recent commit 5 years ago
Nullarbor ⭐ 80
💾 📃 "Reads to report" for public health and clinical microbiology
most recent commit 4 years ago
Clair ⭐ 74
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
most recent commit 3 years ago
Indelope ⭐ 39
find large indels (in the blind spot between GATK/freebayes and SV callers)
most recent commit 6 years ago
Popdel ⭐ 32
Population-wide Deletion Calling
most recent commit a year ago
Mgp1000 ⭐ 7
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
most recent commit 4 months ago
Varathon ⭐ 7
A scalable variant calling and benchmarking framework supporting both short and long reads.
most recent commit 3 years ago
Rmahunter ⭐ 6
most recent commit 4 years ago
Corticall ⭐ 6
Germline DNM caller based on LdBG assembly of pathogens
most recent commit 4 years ago
Rdxon ⭐ 5
Reference-free FASTQ filter for rare germline and somatic variants
most recent commit 9 months ago
The 3 Latest Releases In Genome Variant Calling Open Source Projects
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8latest release November 19, 2020most recent commit 6 months ago
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