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The Top 11 Science Genome Open Source Projects

Open source projects categorized as Science Genome
Categories > Science > Genome
Categories > Science > Science
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 8 months ago
Abyss ⭐ 276
🔬 Assemble large genomes using short reads
most recent commit 8 months ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 4 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Reading ⭐ 48
A collection of papers and books that Storey Lab members should read and others may find useful
most recent commit 9 years ago
Deepsomatic ⭐ 45
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
most recent commit 6 months ago
Mgra ⭐ 16
most recent commit 2 years ago
Csama2015 ⭐ 11
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
most recent commit a year ago
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