Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Pipeline Genome Open Source Projects

Open source projects categorized as Pipeline Genome
Categories > Science > Genome
Categories > Data Processing > Pipeline
Hic_tools ⭐ 454
A collection of tools for Hi-C data analysis
most recent commit 4 months ago
Sarek ⭐ 299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
most recent commit 3 months ago
Edta ⭐ 294
Extensive de-novo TE Annotator
most recent commit 3 months ago
Atac Seq Pipeline ⭐ 290
ENCODE ATAC-seq pipeline
most recent commit a year ago
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Pgap ⭐ 263
NCBI Prokaryotic Genome Annotation Pipeline
most recent commit 3 months ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 5 months ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8most recent commit 6 months ago
Chip Seq Pipeline2 ⭐ 188
ENCODE ChIP-seq pipeline
most recent commit 2 years ago
Vgp Assembly ⭐ 160
VGP repository for the genome assembly working group
most recent commit a year ago
Atac_dnase_pipelines ⭐ 135
ATAC-seq and DNase-seq processing pipeline
most recent commit 5 years ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Eager ⭐ 112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
most recent commit 3 months ago
Shovill ⭐ 104
⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
most recent commit 4 years ago
Fungap ⭐ 102
FunGAP: fungal Genome Annotation Pipeline
most recent commit 5 months ago
Ilus ⭐ 89
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
total releases 13most recent commit 4 months ago
Pipeline Structural Variation ⭐ 87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
most recent commit 3 years ago
Hgtector ⭐ 87
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
most recent commit 7 months ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 5 months ago
Bacannot ⭐ 85
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
most recent commit 5 months ago
Tormes ⭐ 82
Making whole bacterial genome sequencing data analysis easy
most recent commit a year ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
The 9 Latest Releases In Pipeline Genome Open Source Projects
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13latest release August 10, 2022most recent commit 5 months ago
Guideseq ⭐ 66
Analysis pipeline for the GUIDE-seq assay.
total releases 1latest release December 15, 2021most recent commit a year ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8latest release May 24, 2021most recent commit 3 years ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52latest release March 09, 2021most recent commit 3 years ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13latest release February 11, 2021most recent commit 3 years ago
Pepper ⭐ 216
PEPPER-Margin-DeepVariant
total releases 8latest release November 19, 2020most recent commit 6 months ago
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.