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The Top 23 Genome Ngs Open Source Projects

Open source projects categorized as Genome Ngs
Categories > Science > Genome
Categories > Science > Ngs
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Ngsplot ⭐ 231
Quick mining and visualization of NGS data by integrating genomic databases
most recent commit a year ago
Ngb ⭐ 151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
most recent commit 3 months ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Tadbit ⭐ 89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
most recent commit a year ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Ngseasy ⭐ 76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
most recent commit 7 years ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Rapt ⭐ 51
Read Assembly and Annotation Pipeline Tool
most recent commit 8 months ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Snpsplit ⭐ 43
Allele-specific alignment sorting
most recent commit a year ago
Ngs Primerplex ⭐ 42
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
total releases 1most recent commit 9 months ago
Struo ⭐ 40
Ley Lab MetaGenome Profiler DataBase generator
most recent commit a year ago
Dnascan ⭐ 36
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
most recent commit 2 years ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Mtbseq_source ⭐ 32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
most recent commit 8 months ago
Mindthegap ⭐ 30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
most recent commit 2 years ago
Pgcgap ⭐ 29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
most recent commit a year ago
Ngsdat2 ⭐ 28
NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
most recent commit 3 years ago
The 5 Latest Releases In Genome Ngs Open Source Projects
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Ngs Primerplex ⭐ 42
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
total releases 1latest release December 20, 2019most recent commit 9 months ago
Xenomapper ⭐ 8
A utility for splitting mixed origin NGS reads
total releases 6latest release July 08, 2019most recent commit 3 years ago
Rnftools ⭐ 13
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.
total releases 26latest release October 17, 2018most recent commit 5 years ago
Nanosim H ⭐ 8
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
total releases 7latest release February 28, 2017most recent commit 3 years ago
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