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The Top 23 Jupyter Notebook Genome Open Source Projects

Open source projects categorized as Jupyter Notebook Genome
Categories > Science > Genome
Categories > Data Processing > Jupyter Notebook
Bottom Up Attention ⭐ 979
Bottom-up attention model for image captioning and VQA, based on Faster R-CNN and Visual Genome
most recent commit 3 years ago
Visual_genome_python_driver ⭐ 328
A python wrapper for the Visual Genome API
total releases 3most recent commit 7 months ago
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76most recent commit 3 months agonpm ideogram} Downloads
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118most recent commit 3 months ago
Basset ⭐ 195
Convolutional neural network analysis for predicting DNA sequence activity.
most recent commit 4 years ago
Gena_lm ⭐ 120
GENA-LM is a transformer masked language model trained on human DNA sequence.
most recent commit 5 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Peddy ⭐ 104
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
most recent commit 3 years ago
Peregrine ⭐ 94
Peregrine: Fast Genome Assembler Using SHIMMER Index
most recent commit 2 years ago
Tabula Muris Senis ⭐ 81
Tabula Muris Senis
most recent commit 10 months ago
Hic Data Analysis Bootcamp ⭐ 78
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
most recent commit 6 years ago
Neoantigen Vaccine Pipeline ⭐ 72
Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
most recent commit 3 months ago
Scte ⭐ 65
most recent commit 9 months ago
Variant Qc ⭐ 61
Quality control methods for human genomic variants.
most recent commit 2 years ago
Higashi ⭐ 60
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
total releases 2most recent commit 7 months ago
Space Time ⭐ 45
Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016
most recent commit 5 years ago
Metage2metabo ⭐ 42
From annotated genomes to metabolic screening in large scale microbiotas
total releases 33most recent commit 3 months ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8most recent commit 3 years ago
Struo ⭐ 40
Ley Lab MetaGenome Profiler DataBase generator
most recent commit a year ago
Biopython Coronavirus ⭐ 39
Biopython Jupyter Notebook tutorial to characterize a small genome
most recent commit 4 years ago
Genome Grist ⭐ 34
map Illumina metagenomes to genomes!
total releases 24most recent commit 6 months ago
Bottom Up Attention Ai Challenger ⭐ 33
most recent commit 6 years ago
Genome Sketching ⭐ 33
online notebooks for a review of genome sketching
most recent commit 5 years ago
The 10 Latest Releases In Jupyter Notebook Genome Open Source Projects
Datasets ⭐ 259
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
total releases 118latest release December 01, 2023most recent commit 3 months ago
Ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 8total releases 76latest release September 05, 2023most recent commit 3 months agonpm ideogram} Downloads
Genome Grist ⭐ 34
map Illumina metagenomes to genomes!
total releases 24latest release December 07, 2022most recent commit 6 months ago
Jbrowse Jupyter ⭐ 21
A python package for showing JBrowse views
total releases 16latest release December 03, 2022most recent commit 4 months ago
Metage2metabo ⭐ 42
From annotated genomes to metabolic screening in large scale microbiotas
total releases 33latest release September 26, 2022most recent commit 3 months ago
Higashi ⭐ 60
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
total releases 2latest release January 26, 2022most recent commit 7 months ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8latest release May 24, 2021most recent commit 3 years ago
Refseq_masher ⭐ 15
Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
total releases 3latest release November 23, 2020most recent commit 3 years ago
Deepmased ⭐ 13
Deep learning for Metagenome Assembly Error Detection
total releases 2latest release April 15, 2020most recent commit 3 years ago
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