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The Top 21 Genomics Genome Assembly Open Source Projects

Open source projects categorized as Genomics Genome Assembly
Categories > Genome Assembly
Categories > Science > Genomics
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Redundans ⭐ 121
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
most recent commit 4 months ago
Mccortex ⭐ 86
De novo genome assembly and multisample variant calling
most recent commit 5 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19most recent commit 3 years ago
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8most recent commit 3 years ago
Haslr ⭐ 39
A fast tool for hybrid genome assembly of long and short reads
most recent commit 4 years ago
Indelope ⭐ 39
find large indels (in the blind spot between GATK/freebayes and SV callers)
most recent commit 6 years ago
Nam Genomes ⭐ 34
Detailed bioinformatics scripts and methods used in the NAM genome paper.
most recent commit 2 years ago
Instagraal ⭐ 33
Large genome reassembly based on Hi-C data, continuation of GRAAL
total releases 6most recent commit a year ago
Genomegraphs.jl ⭐ 29
A modern genomics framework for julia
most recent commit 4 years ago
Lrsday ⭐ 27
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
most recent commit 6 months ago
Treeval ⭐ 17
Pipelines for the production of Treeval data
most recent commit 3 months ago
Centroflye ⭐ 17
An algorithm for centromere assembly using long error-prone reads
most recent commit 3 years ago
Physlr ⭐ 17
⛓️ Construct a Physical Map from Linked Reads
most recent commit a year ago
Mgse ⭐ 16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
most recent commit 2 years ago
Camsa ⭐ 15
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
total releases 36most recent commit 4 years ago
Referee ⭐ 13
Reference genome quality scores
most recent commit 3 years ago
Berokka ⭐ 12
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
most recent commit 5 years ago
Genomicscourse ⭐ 11
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
most recent commit 7 months ago
Genomeassembly ⭐ 5
Implementation of ToL genome assembly workflows
most recent commit 4 months ago
The 4 Latest Releases In Genomics Genome Assembly Open Source Projects
Allhic ⭐ 41
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
total releases 8latest release May 24, 2021most recent commit 3 years ago
Camsa ⭐ 15
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
total releases 36latest release April 13, 2020most recent commit 4 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19latest release March 23, 2020most recent commit 3 years ago
Instagraal ⭐ 33
Large genome reassembly based on Hi-C data, continuation of GRAAL
total releases 6latest release March 21, 2019most recent commit a year ago
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