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The Top 18 Python Genomics Genetics Open Source Projects

Open source projects categorized as Python Genomics Genetics
Categories > Genetics
Categories > Science > Genomics
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9most recent commit 4 months ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13most recent commit 3 years ago
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103most recent commit 3 months ago
Pgltools ⭐ 23
Paired Genomic Loci Tool Suite
total releases 13most recent commit a year ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Genoml2 ⭐ 17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
most recent commit 6 months ago
Manhattan_generator ⭐ 15
Manhattan plot Generator
most recent commit 6 years ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12most recent commit a year agopypi pyplink} Downloads
Region Plot ⭐ 12
A tool to plot significant regions of GWAS
most recent commit 4 years ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Sequence Database Curator ⭐ 10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
most recent commit 5 years ago
Hat ⭐ 10
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
most recent commit a year ago
Banding Pattern Extraction ⭐ 6
Banding pattern extraction, and banding pattern segmentation mask generation for stained banded chromosome images.
most recent commit 2 years ago
Aces ⭐ 5
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.
most recent commit 7 months ago
Recimap ⭐ 5
Recimap (a reciprocal mapping tool) was developed as a bioinformatics command-line tool/pipeline to find rearrangements breakpoints between two closely related genomes.
most recent commit 5 months ago
The 5 Most Depended On Python Genomics Genetics Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9latest release May 20, 2022most recent commit 4 months ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
The 8 Latest Releases In Python Genomics Genetics Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103latest release December 01, 2023most recent commit 3 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9latest release May 20, 2022most recent commit 4 months ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13latest release February 11, 2021most recent commit 3 years ago
Pgltools ⭐ 23
Paired Genomic Loci Tool Suite
total releases 13latest release July 26, 2019most recent commit a year ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
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