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The Top 23 Genomics Genetics Open Source Projects

Open source projects categorized as Genomics Genetics
Categories > Genetics
Categories > Science > Genomics
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9most recent commit 4 months ago
Humanidiogramlibrary ⭐ 70
Resource of human chromosome schematics & images
most recent commit 3 years ago
Geneticsmakie.jl ⭐ 66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
most recent commit 3 months ago
Awesome Genetics ⭐ 62
A curated list of awesome bioinformatics software.
most recent commit 2 years ago
Awesome Structural Bioinformatics ⭐ 54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
most recent commit a year ago
Radiator ⭐ 53
RADseq Data Exploration, Manipulation and Visualization using R
most recent commit a year ago
Tomahawk ⭐ 39
Fast calculations of linkage-disequilibrium in large-scale human cohorts
most recent commit 4 years ago
Popgen.jl ⭐ 38
Population Genetics in Julia
most recent commit 10 months ago
Dee2 ⭐ 37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
most recent commit 8 months ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Variantkey ⭐ 34
Numerical Encoding for Human Genetic Variants
most recent commit 10 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7most recent commit 7 months ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13most recent commit 3 years ago
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103most recent commit 3 months ago
Pgltools ⭐ 23
Paired Genomic Loci Tool Suite
total releases 13most recent commit a year ago
Genomeanalysismodule ⭐ 21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
most recent commit a year ago
Iliad ⭐ 21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
most recent commit 4 months ago
Tachyon ⭐ 17
High-level API for storing and querying sequence variant data
most recent commit 5 years ago
Stackr ⭐ 17
stackr: an R package to run stacks software pipeline
most recent commit 3 years ago
Genoml2 ⭐ 17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
most recent commit 6 months ago
The 7 Most Depended On Genomics Genetics Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Bedmatrix ⭐ 10
A matrix-like wrapper around PLINK .bed files
dependent packages 9total releases 12latest release July 08, 2020most recent commit 4 years ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9latest release May 20, 2022most recent commit 4 months ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
The 10 Latest Releases In Genomics Genetics Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103latest release December 01, 2023most recent commit 3 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9latest release May 20, 2022most recent commit 4 months ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13latest release February 11, 2021most recent commit 3 years ago
Bedmatrix ⭐ 10
A matrix-like wrapper around PLINK .bed files
dependent packages 9total releases 12latest release July 08, 2020most recent commit 4 years ago
Pgltools ⭐ 23
Paired Genomic Loci Tool Suite
total releases 13latest release July 26, 2019most recent commit a year ago
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
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