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The Top 23 Genetics Open Source Projects

Open source projects categorized as Genetics
Categories > Genetics
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Self Parking Car Evolution ⭐ 636
🧬 Training the car to do self-parking using a genetic algorithm
most recent commit 2 years ago
Platypus ⭐ 524
A Free and Open Source Python Library for Multiobjective Optimization
dependent packages 15total releases 6most recent commit 3 months agopypi Platypus-Opt} Downloads
Gggenes ⭐ 428
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
dependent packages 3total releases 8most recent commit 5 months ago
Koi ⭐ 357
Koi Farm, a koi breeding game
most recent commit 6 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Sgkit ⭐ 194
Statistical genetics toolkit
dependent packages 1total releases 7most recent commit 4 months agopypi sgkit} Downloads
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Annotsv ⭐ 180
Annotation and Ranking of Structural Variation
most recent commit 3 months ago
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9most recent commit 4 months ago
Graphtyper ⭐ 156
Population-scale genotyping using pangenome graphs
most recent commit 4 months ago
Neuroevolution Btc Trader ⭐ 146
Building a population of models that trade crypto and mutate iteratively
most recent commit 3 years ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Molgenis ⭐ 106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
dependent packages 39total releases 98most recent commit 4 months ago
Rvtests ⭐ 95
Rare variant test software for next generation sequencing data
most recent commit 3 years ago
Impute Me ⭐ 92
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
most recent commit 2 years ago
Osgenome ⭐ 90
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
most recent commit a year ago
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36most recent commit 2 years agopypi cmapPy} Downloads
Cutevariant ⭐ 85
A standalone and free application to explore genetics variations from VCF file
total releases 40most recent commit 8 months ago
Verifybamid ⭐ 78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
most recent commit 4 months ago
Gennet ⭐ 75
Framework for Interpretable Neural Networks
most recent commit 3 months ago
Humanidiogramlibrary ⭐ 70
Resource of human chromosome schematics & images
most recent commit 3 years ago
The 10 Most Depended On Genetics Open Source Projects
Molgenis ⭐ 106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
dependent packages 39total releases 98latest release August 03, 2020most recent commit 4 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Platypus ⭐ 524
A Free and Open Source Python Library for Multiobjective Optimization
dependent packages 15total releases 6latest release November 04, 2022most recent commit 3 months agopypi Platypus-Opt} Downloads
Bedmatrix ⭐ 10
A matrix-like wrapper around PLINK .bed files
dependent packages 9total releases 12latest release July 08, 2020most recent commit 4 years ago
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36latest release February 08, 2019most recent commit 2 years agopypi cmapPy} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Async Genetic ⭐ 25
A blazing fast and fully async genetic algorithm
dependent packages 4total releases 38latest release June 29, 2022most recent commit 8 months agonpm async-genetic} Downloads
R ⭐ 11
R packages
dependent packages 4total releases 50latest release August 26, 2023most recent commit 4 months ago
Gpmap ⭐ 10
A Python API for managing genotype-phenotype map data
dependent packages 3total releases 15latest release July 28, 2020most recent commit 8 months agopypi gpmap} Downloads
Gggenes ⭐ 428
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
dependent packages 3total releases 8latest release September 05, 2023most recent commit 5 months ago
The 10 Latest Releases In Genetics Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103latest release December 01, 2023most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Nimpress ⭐ 9
Polygenic score calculation from VCF in Nim.
latest release November 27, 2023most recent commit 3 years ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
C2.js ⭐ 70
JavaScript library for creative coding
dependent packages 2total releases 8latest release September 24, 2023most recent commit 4 months agonpm c2.js} Downloads
Gggenes ⭐ 428
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
dependent packages 3total releases 8latest release September 05, 2023most recent commit 5 months ago
R ⭐ 11
R packages
dependent packages 4total releases 50latest release August 26, 2023most recent commit 4 months ago
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