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The Top 13 Transcriptomics Gene Expression Open Source Projects

Open source projects categorized as Transcriptomics Gene Expression
Categories > Gene Expression
Categories > Transcriptomics
Isee ⭐ 217
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
most recent commit 14 days ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 3 months ago
Terminus ⭐ 43
most recent commit 2 years ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1most recent commit 8 months ago
Asap ⭐ 24
ASAP : Automated Single-cell Analysis Pipeline
most recent commit 4 months ago
Chromoformer ⭐ 24
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
total releases 4most recent commit 8 months ago
Fishpond ⭐ 23
Differential expression and allelic analysis, nonparametric statistics
most recent commit 8 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2most recent commit 2 years ago
Circompara ⭐ 12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
most recent commit 4 years ago
Biomm ⭐ 9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
most recent commit a year ago
Bgee_pipeline ⭐ 8
Source code of the Bgee pipeline used to build the Bgee database
most recent commit a year ago
The 4 Latest Releases In Transcriptomics Gene Expression Open Source Projects
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6latest release October 08, 2022most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2latest release March 30, 2021most recent commit 2 years ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1latest release June 04, 2020most recent commit 8 months ago
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